Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3842g00023 ATGCAAGGTATGAAGAAGCAGCAGAAGCAGAAGCAGTTGGCCAATGAAGAATCTAAGAAGAAGGAGCGTCACATTGTGACGTGGACTCAAGAGGAGGATGATATACTCAGAGAGCAAATTGGCATCCATGGAACTGAAAATTGGGCAATTATTGCTTCTAAATTCAAGGACAAAACGACAAGACAGTGCAGAAGAAGATGGTACACTTATTTGAATTCTGATTTCAAGAAAGGAGGATGGTCACCAGAGGAAGACATGCTCTTATGTGAGGCTCAAAAAATATTTGGTAACAGGTGGACAGAAATAGCAAAGGTGGTTTCAGGCAGAACGGATAATGCTGTGAAAAACCGTTTCTCCACATTGTGCAAAAAGAGAGCAAAATATGAAGCCTTAGCAAAAGAGAACAACACTTCATACATCAATTCAAATAACAAAAGGATTATTTTTGAACACGATTATAATACAGATGCGGCTTCGGCACCTGCAGTAGCTATCAAGAAGATGAGGCGATCACATATCCCTGATGGTTCAGAAAAAATCAACTTTGGAGACAGATCCCATAAACAAAATGGAACTCCAATAAATCAGCAGCCGAGAGCACCTTTTGCAGTTTTAGCTAACTCTCATAATGTCAACAACTTGACAGACCAGCATCATGTATGCAATGTGAAGTTTAGTGGTTATGCCCAAAACAACAATGTTCAAGGAACATTCCTCAAAAAGGATGACCCTAAGATAAGCGCATTGATGCAACAAGCTGAGTTACTAAGTTCACTAGCTCTAAAAGTTGACGCAGAGAACATGGAGCAAAGTCTTGAAGATGCATGGAAGGTTCTTCAAGAGTTTATGAACCGAACCAGAGAATCAGATATTCCCAGATATAAGATTCCAGATCTACTGCTTGTAGATCTTAAAGATTTGTTGGAAGACTTAAAAAGTACTAGTGTGGGAATCCAGCCATGTTGGAGGCAAATGGAACTATATGAAGACTCTCCAGGCAGTTCTGAATACAGTACAGAATCAACTCTCCCTCATCCAGCTAGTGAGAATTTGGAAAACTCACTGCATCAGGATATTGGAACTGAACTGAGGTCTATCCAAATTGGAGATCAAAAAGGAGTTAGAGGATGTGACCAAGGGATTCTTTCTAGTGCAACTGTGGATCAAGATATGTTCCCATCTTGTGCGGAACAAATAAACAATGATGGCATTGTTTCTGCCTTATCAAGTACAGAGTTCAGTTCCCCTCTTCAAGTTACCCCTCTGTTCAGATCCTTAGCTGCAGGAATTCCTAGCCCACAATTTTCAGAAAGTGAAAGGAACTTCCTTATGAAAACACTTGGAATGGAGTCTCCATCTCTCAATCCAAGTGCCAACCCCTCACAACCGCCGCTCTGCAAAAGAGCCCTCCTACATAGTTTATAA 1425 0.4077 MQGMKKQQKQKQLANEESKKKERHIVTWTQEEDDILREQIGIHGTENWAIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENNTSYINSNNKRIIFEHDYNTDAASAPAVAIKKMRRSHIPDGSEKINFGDRSHKQNGTPINQQPRAPFAVLANSHNVNNLTDQHHVCNVKFSGYAQNNNVQGTFLKKDDPKISALMQQAELLSSLALKVDAENMEQSLEDAWKVLQEFMNRTRESDIPRYKIPDLLLVDLKDLLEDLKSTSVGIQPCWRQMELYEDSPGSSEYSTESTLPHPASENLENSLHQDIGTELRSIQIGDQKGVRGCDQGILSSATVDQDMFPSCAEQINNDGIVSALSSTEFSSPLQVTPLFRSLAAGIPSPQFSESERNFLMKTLGMESPSLNPSANPSQPPLCKRALLHSL 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3842g00023 474 Gene3D - 79 148 - -
Gabi3842g00023 474 PANTHER MYB PROTEIN-RELATED 27 185 - -
Gabi3842g00023 474 ProSiteProfiles Myb-like domain profile. 72 122 IPR001005 -
Gabi3842g00023 474 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 76 126 IPR017930 -
Gabi3842g00023 474 Pfam Myb-like DNA-binding domain 28 88 - -
Gabi3842g00023 474 Coils Coil 4 24 - -
Gabi3842g00023 474 SMART sant 24 73 IPR001005 -
Gabi3842g00023 474 SMART sant 76 124 IPR001005 -
Gabi3842g00023 474 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 75 IPR017930 -
Gabi3842g00023 474 CDD SANT 80 121 IPR001005 -
Gabi3842g00023 474 FunFam Transcription factor MYB124 20 76 - -
Gabi3842g00023 474 ProSiteProfiles Myb-like domain profile. 28 71 IPR001005 -
Gabi3842g00023 474 MobiDBLite consensus disorder prediction 1 23 - -
Gabi3842g00023 474 Gene3D - 15 76 - -
Gabi3842g00023 474 CDD SANT 27 71 IPR001005 -
Gabi3842g00023 474 SUPERFAMILY Homeodomain-like 24 118 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3842g00023 Gabi-Chr3842 265177 272194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3842g00023 66 474 MYB Transcription Factor Family AT1G14350 54.237 1.85e-135 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi3842g00023 Myb_DNA-bind_6 8.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3842g00023 K09422 - gmx:100807667 787.719