Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3842g00021 ATGGGTAACTGCCTAGATTCTTCAGCCAAAATTGATGCAGCTCAAAGCTCCAGATCCACTTCTGCATCAGGAATCTCAAAAACTAGTCCTTCCAGCCTCTCTATTCCATCATACAGTGAAAAAAGCAATGCCTCAAGTCTTCCCACACCAAGGTCTGAGGGTGAAATCTTGTCTTCGCCCAATCTTAAGTCCTTCACATTCAATGAGCTGAAGAATGCCACCAGAAATTTTCGTCCTGATAGTCTTCTTGGTGAAGGGGGATTTGGTTATGTTTATAAGGGATGGATTGATGAACATACATTTACAGCTTCAAAACCTGGATCAGGAATGGTTGTTGCTGTAAAGAGGCTTAAGCCTGAAGGTTTTCAAGGTCATAAGGAGTGGCTGACTGAGGTTAACTACCTTGGACAACTGCACCATCGTAATCTGGTTAAATTAATTGGGTACTGCTCGGAGGGAGAGAACCGGCTATTGGTCTATGAGTTTATGCCCAAAGGGAGCTTAGAAAACCATCTATTTAGAAGAGGACCGCAACCACTCTCTTGGTCAGTGAGGATGAAAGTGGCCATTGGTGCTGCCAGGGGACTCTCTTTCCTTCATAATGCCAAATCACAAGTCATATATCGTGATTTTAAAGCTTCTAACATCCTACTGGATGCTGAGTTCAATGCTAAACTCTCTGATTTTGGCTTAGCTAAGGCGGGTCCGACCGGTGATAGAACTCATGTGTCTACTCAAGTCATGGGTACTCAAGGATATGCAGCACCTGAATATGTTGCAACTGGTCGGCTTACAGCAAAAAGTGATGTATACAGCTTTGGGGTTGTGTTGCTTGAACTTTTATCTGGAAGACGAGCTGTTGATAAAACAATAGCTGGTGTGGACCAGAATCTGGTGGACTGGGCAAAACCATATTTGGGTGATAAAAGAAGACTATTCAGGATTATGGATTCCAAGTTGGAGGGACAATACCCACAAAAAGGAGCATTCATGGCTGCTACACTTGCTCTACAATGCCTTAATAGTGAAGCCAAGGCAAGGCCTCCAATGACAGAGGTTTTAGCAACTCTGGAACAGATAGAAGCCCCCAAAATTGCAGGCAGAAATTCCCATTCAGAACATCATAGAGGAGTCCATACTCCTGTGAGAAAGTCTCCTGCACGAAACCGGTCCCCTTTAAATCTAACTCCAACTGCATCACCACTCCCATCTTACCGGCAATCTCCTCTTGTGCACTAA 1239 0.4423 MGNCLDSSAKIDAAQSSRSTSASGISKTSPSSLSIPSYSEKSNASSLPTPRSEGEILSSPNLKSFTFNELKNATRNFRPDSLLGEGGFGYVYKGWIDEHTFTASKPGSGMVVAVKRLKPEGFQGHKEWLTEVNYLGQLHHRNLVKLIGYCSEGENRLLVYEFMPKGSLENHLFRRGPQPLSWSVRMKVAIGAARGLSFLHNAKSQVIYRDFKASNILLDAEFNAKLSDFGLAKAGPTGDRTHVSTQVMGTQGYAAPEYVATGRLTAKSDVYSFGVVLLELLSGRRAVDKTIAGVDQNLVDWAKPYLGDKRRLFRIMDSKLEGQYPQKGAFMAATLALQCLNSEAKARPPMTEVLATLEQIEAPKIAGRNSHSEHHRGVHTPVRKSPARNRSPLNLTPTASPLPSYRQSPLVH 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3842g00021 412 SUPERFAMILY Protein kinase-like (PK-like) 48 357 IPR011009 -
Gabi3842g00021 412 Gene3D Transferase(Phosphotransferase) domain 1 163 379 - -
Gabi3842g00021 412 MobiDBLite consensus disorder prediction 1 58 - -
Gabi3842g00021 412 MobiDBLite consensus disorder prediction 387 412 - -
Gabi3842g00021 412 Pfam Protein tyrosine and serine/threonine kinase 81 356 IPR001245 GO:0004672|GO:0006468
Gabi3842g00021 412 CDD STKc_IRAK 83 360 - -
Gabi3842g00021 412 Gene3D Phosphorylase Kinase; domain 1 53 162 - -
Gabi3842g00021 412 MobiDBLite consensus disorder prediction 9 58 - -
Gabi3842g00021 412 ProSitePatterns Protein kinases ATP-binding region signature. 83 115 IPR017441 GO:0005524
Gabi3842g00021 412 FunFam Serine/threonine-protein kinase BIK1 44 162 - -
Gabi3842g00021 412 ProSiteProfiles Protein kinase domain profile. 77 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3842g00021 412 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Gabi3842g00021 412 FunFam Probable serine/threonine-protein kinase PBL8 163 376 - -
Gabi3842g00021 412 PANTHER OS01G0588500 PROTEIN-RELATED 37 361 - -
Gabi3842g00021 412 MobiDBLite consensus disorder prediction 366 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3842g00021 Gabi-Chr3842 231356 234747 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3842g00021 53 357 Glycoside Hydrolase AT3G07070 53.247 3.49e-113 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gabi3842g00021 PK_Tyr_Ser-Thr 9.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3842g00021 - - gmx:100809778 766.918