Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3842g00020 ATGGGTAACTGCCTAGATTCTTCAGCCAAAATTGATGCAGCTCAAAGCTCCAGATCCACTTCTGGAATCTCAAAAACTAGTCCTTCCAGCCTCTCTATTCCATCATACAGTGAAAAAAGCAATGCCTCAAGTCTTCCCACACCAAGGTCTGAGGGTGAAATCTTGTCTTCGCCCAATCTTAAGTCCTTCACATTCAATGAGCTGAAGAATGCCACCAGAAATTTTCGTCCTGATAGTCTTCTTGGTGAAGGGGGATTTGGTTATGTTTATAAGGGATGGATTGATGAACATACATTTACAGCTTCAAAACCTGGATCAGGAATGGTTGTTGCTGTAAAGAGGCTTAAGCCTGAAGGTTTTCAAGGTCATAAGGAGTGGCTGACTGAGGTTAACTACCTTGGACAACTGCACCATCGTAATCTGGTTAAATTAATTGGGTACTGCTCGGAGGGAGAGAACCGGCTATTGGTCTATGAGTTTATGCCCAAAGGGAGCTTAGAAAACCATCTATTTAGAAGAGGACCGCAACCACTCTCTTGGTCAGTGAGGATGAAAGTGGCCATTGGTGCTGCCAGGGGACTCTCTTTCCTTCATAATGCCAAATCACAAGTCATATATCGTGATTTTAAAGCTTCTAACATCCTACTGGATGCTGAGTTCAATGCTAAACTCTCTGATTTTGGCTTAGCTAAGGCGGGTCCGACCGGTGATAGAACTCATGTGTCTACTCAAGTCATGGGTACTCAAGGATATGCAGCACCTGAATATGTTGCAACTGGTCGGCTTACAGCAAAAAGTGATGTATACAGCTTTGGGGTTGTGTTGCTTGAACTTTTATCTGGAAGACGAGCTGTTGATAAAACAATAGCTGGTGTGGACCAGAATCTGGTGGACTGGGCAAAACCATATTTGGGTGATAAAAGAAGACTATTCAGGATTATGGATTCCAAGTTGGAGGGACAATACCCACAAAAAGGAGCATTCATGGCTGCTACACTTGCTCTACAATGCCTTAATAGTGAAGCCAAGGCAAGGCCTCCAATGACAGAGGTTTTAGCAACTCTGGAACAGATAGAAGCCCCCAAAATTGCAGGCAGAAATTCCCATTCAGAACATCATAGAGGAGTCCATACTCCTGTGAGAAAGTCTCCTGCACGAAACCGGTCCCCTTTAAATCTAACTCCAACTGCATCACCACTCCCATCTTACCGGCAATCTCCTCTTGTGCACTAA 1233 0.442 MGNCLDSSAKIDAAQSSRSTSGISKTSPSSLSIPSYSEKSNASSLPTPRSEGEILSSPNLKSFTFNELKNATRNFRPDSLLGEGGFGYVYKGWIDEHTFTASKPGSGMVVAVKRLKPEGFQGHKEWLTEVNYLGQLHHRNLVKLIGYCSEGENRLLVYEFMPKGSLENHLFRRGPQPLSWSVRMKVAIGAARGLSFLHNAKSQVIYRDFKASNILLDAEFNAKLSDFGLAKAGPTGDRTHVSTQVMGTQGYAAPEYVATGRLTAKSDVYSFGVVLLELLSGRRAVDKTIAGVDQNLVDWAKPYLGDKRRLFRIMDSKLEGQYPQKGAFMAATLALQCLNSEAKARPPMTEVLATLEQIEAPKIAGRNSHSEHHRGVHTPVRKSPARNRSPLNLTPTASPLPSYRQSPLVH 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3842g00020 410 MobiDBLite consensus disorder prediction 364 410 - -
Gabi3842g00020 410 FunFam Serine/threonine-protein kinase BIK1 42 160 - -
Gabi3842g00020 410 CDD STKc_IRAK 81 358 - -
Gabi3842g00020 410 Pfam Protein tyrosine and serine/threonine kinase 79 354 IPR001245 GO:0004672|GO:0006468
Gabi3842g00020 410 MobiDBLite consensus disorder prediction 385 410 - -
Gabi3842g00020 410 PANTHER OS01G0588500 PROTEIN-RELATED 37 359 - -
Gabi3842g00020 410 ProSiteProfiles Protein kinase domain profile. 75 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3842g00020 410 Gene3D Phosphorylase Kinase; domain 1 51 160 - -
Gabi3842g00020 410 MobiDBLite consensus disorder prediction 1 56 - -
Gabi3842g00020 410 ProSitePatterns Protein kinases ATP-binding region signature. 81 113 IPR017441 GO:0005524
Gabi3842g00020 410 Gene3D Transferase(Phosphotransferase) domain 1 161 377 - -
Gabi3842g00020 410 FunFam Probable serine/threonine-protein kinase PBL8 161 374 - -
Gabi3842g00020 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Gabi3842g00020 410 MobiDBLite consensus disorder prediction 9 56 - -
Gabi3842g00020 410 SUPERFAMILY Protein kinase-like (PK-like) 46 355 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3842g00020 Gabi-Chr3842 231355 234748 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3842g00020 51 355 Glycoside Hydrolase AT3G07070 53.247 3.96e-113 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gabi3842g00020 PK_Tyr_Ser-Thr 9.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3842g00020 - - gmx:100809778 751.895