Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3842g00019 ATGGGTAACTGCCTAGATTCTTCAGCCAAAATTGATGCAGCTCAAAGCTCCAGCTTTTCTTCTTCTTCAGCATCAGGAATCTCAAAAACTAGTCCTTCCAGCCTCTCTATTCCATCATACAGTGAAAAAAGCAATGCCTCAAGTCTTCCCACACCAAGGTCTGAGGGTGAAATCTTGTCTTCGCCCAATCTTAAGTCCTTCACATTCAATGAGCTGAAGAATGCCACCAGAAATTTTCGTCCTGATAGTCTTCTTGGTGAAGGGGGATTTGGTTATGTTTATAAGGGATGGATTGATGAACATACATTTACAGCTTCAAAACCTGGATCAGGAATGGTTGTTGCTGTAAAGAGGCTTAAGCCTGAAGGTTTTCAAGGTCATAAGGAGTGGCTGACTGAGGTTAACTACCTTGGACAACTGCACCATCGTAATCTGGTTAAATTAATTGGGTACTGCTCGGAGGGAGAGAACCGGCTATTGGTCTATGAGTTTATGCCCAAAGGGAGCTTAGAAAACCATCTATTTAGAAGAGGACCGCAACCACTCTCTTGGTCAGTGAGGATGAAAGTGGCCATTGGTGCTGCCAGGGGACTCTCTTTCCTTCATAATGCCAAATCACAAGTCATATATCGTGATTTTAAAGCTTCTAACATCCTACTGGATGCTGAGTTCAATGCTAAACTCTCTGATTTTGGCTTAGCTAAGGCGGGTCCGACCGGTGATAGAACTCATGTGTCTACTCAAGTCATGGGTACTCAAGGATATGCAGCACCTGAATATGTTGCAACTGGTCGGCTTACAGCAAAAAGTGATGTATACAGCTTTGGGGTTGTGTTGCTTGAACTTTTATCTGGAAGACGAGCTGTTGATAAAACAATAGCTGGTGTGGACCAGAATCTGGTGGACTGGGCAAAACCATATTTGGGTGATAAAAGAAGACTATTCAGGATTATGGATTCCAAGTTGGAGGGACAATACCCACAAAAAGGAGCATTCATGGCTGCTACACTTGCTCTACAATGCCTTAATAGTGAAGCCAAGGCAAGGCCTCCAATGACAGAGGTTTTAGCAACTCTGGAACAGATAGAAGCCCCCAAAATTGCAGGCAGAAATTCCCATTCAGAACATCATAGAGGAGTCCATACTCCTGTGAGAAAGTCTCCTGCACGAAACCGGTCCCCTTTAAATCTAACTCCAACTGCATCACCACTCCCATCTTACCGGCAATCTCCTCTTGTGCACTAA 1245 0.441 MGNCLDSSAKIDAAQSSSFSSSSASGISKTSPSSLSIPSYSEKSNASSLPTPRSEGEILSSPNLKSFTFNELKNATRNFRPDSLLGEGGFGYVYKGWIDEHTFTASKPGSGMVVAVKRLKPEGFQGHKEWLTEVNYLGQLHHRNLVKLIGYCSEGENRLLVYEFMPKGSLENHLFRRGPQPLSWSVRMKVAIGAARGLSFLHNAKSQVIYRDFKASNILLDAEFNAKLSDFGLAKAGPTGDRTHVSTQVMGTQGYAAPEYVATGRLTAKSDVYSFGVVLLELLSGRRAVDKTIAGVDQNLVDWAKPYLGDKRRLFRIMDSKLEGQYPQKGAFMAATLALQCLNSEAKARPPMTEVLATLEQIEAPKIAGRNSHSEHHRGVHTPVRKSPARNRSPLNLTPTASPLPSYRQSPLVH 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3842g00019 414 Gene3D Transferase(Phosphotransferase) domain 1 165 381 - -
Gabi3842g00019 414 PANTHER OS01G0588500 PROTEIN-RELATED 40 363 - -
Gabi3842g00019 414 Gene3D Phosphorylase Kinase; domain 1 55 164 - -
Gabi3842g00019 414 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Gabi3842g00019 414 MobiDBLite consensus disorder prediction 9 60 - -
Gabi3842g00019 414 MobiDBLite consensus disorder prediction 368 414 - -
Gabi3842g00019 414 ProSitePatterns Protein kinases ATP-binding region signature. 85 117 IPR017441 GO:0005524
Gabi3842g00019 414 FunFam Serine/threonine-protein kinase BIK1 46 164 - -
Gabi3842g00019 414 MobiDBLite consensus disorder prediction 389 414 - -
Gabi3842g00019 414 ProSiteProfiles Protein kinase domain profile. 79 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3842g00019 414 Pfam Protein tyrosine and serine/threonine kinase 83 358 IPR001245 GO:0004672|GO:0006468
Gabi3842g00019 414 CDD STKc_IRAK 85 362 - -
Gabi3842g00019 414 FunFam Probable serine/threonine-protein kinase PBL8 165 378 - -
Gabi3842g00019 414 MobiDBLite consensus disorder prediction 1 60 - -
Gabi3842g00019 414 SUPERFAMILY Protein kinase-like (PK-like) 50 359 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3842g00019 Gabi-Chr3842 231355 234748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3842g00019 55 359 Glycoside Hydrolase AT3G07070 53.247 3.04e-113 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gabi3842g00019 PK_Tyr_Ser-Thr 1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3842g00019 - - gmx:100809778 752.666