Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3842g00018 ATGGGGAAAGGAAGAAGTCCTGGGAAATGGATCAGGAACTTACTCTCGGGGAAGAAATCATCATCAAAGTCTAATTCATCAAAGAAGAATGTTATTTTAAAACCTTCAAGTGACAAGGATGTGCTGGGGTCTTCTGAGATATCCGTGTCTGATCCAAATGTGGATTCTTTGCTGATATCCGCGCCAATTTGTGGAGCTAATGCAACTATAGGAGTGCTTTCAGAAAAGGAAGTGGTTAGTAGGTCATCACATGATAGGGTTATTCTTTCAACTGGAGATGAAGAGGCTCATGCACCAGCTGTTGCTAATGTTGGATCTCAAGAAGATCTTGAGCAACTCAGGCTTACAGAAGCAGCTATAAAAGTTCAGGCGGCTTGTAGAGGCCATCAGGCTCGTCGAACATTTCAAACAGTCAAAGGTATCGTACAACTGCAAGCTTTTATTCGTGGCCACTTGATTAGAAGACAAGCTGTTTCTGCTTTATACTGTGTTAAGGGAATAGTTAAATTTCAAGCATTGGCTCGTGGTTACAATGTTAGGCGTTCTGATATTGGGCTCGCAGTCCTGAAAATTCGTAAGGATACTCAAAGTTCAAATTCTATTGAGGTAGTTACATCTACTCAGGCAGAGAAGCTGTCAGAAAGTGTGTTTGTTCACAAGCTTCTGGCTTCATCGTCCTATGCAGTTCCTCTATCTCTCACTTGTGATCCCGTAGAACCTAATTTGGCTTGGAAATGGCTTGACCTCTGGTCAAGGTCACACTTTTGGGCACCACTTCCTGAACTGAAGAAGAAACTTGACTCAGTGCCTGATGAGAAAAGTGGCAGTTACCAAACAGTTGAAAGGGGACAAGTTAAAAGAAATACTCGGAAATCTCCTGCTGTGAAAGCTGACGATGGCTCAATTTCAGGTTCTAACAAATATAAACAGCGTCCAAAAAAGGACTCAAACCACCCATTGCTTTCAGCTCAGGAACAACCACAAAAGGAAATCGAGAAAACTAGTCTTAAAAAAACTCGCATGCAAAATGTTTCAGACAGATGTGAGGATGTTAATGAGAAAAGAAAACATAGCAATAGAAAAATTTCAGATCATACTATCACTGATGTTTCAGAGCAGGTCCCCAGTGCCTCTTCAGAGAAAATGAAAGATTTAACGGTGCATAAGTCAAAAGGGTCTGATCCTGAGAAAGATCTTGGACAGCAAGCAAAAGGGGAGAATGATAATGAGCCACATAATGATCCTATTGCTGTCTTGCAGACTAGTGTGGAGAATGGAAGAGATGAAAGAATTCAAGGAGTCAGTAAGGACTTGAACGGTGGTGACAATTGTATCAGCAACAATTGCCAAAGAAGGGCTTCACTACCTGCTAATTTTAATGATCAGGATAATGAGTTACATAACACACCAAGAGTGCCCAGTTATATGGCTCCTACTGAATCTGCCAAAGCTAAGCTTAAAGGACAAGGTTCCCCAAGATTTGCTACTGATTTGGTTGACAAAAACAGTATAACCAGGCGGCATTCACTTTCATCTTCGCTTAATGGAAGGTCAGGTTCATTTTCCCCAAGAGCAGAAAGACTCATAACCATGAGCAGCAGAGGAGTTATAAGGACTGATAGATCTCTGTCATCTTCAAGGGATGGGACTGAGAAGTTGATCCAACCTCAGTGGAGAAGGTGA 1683 0.4177 MGKGRSPGKWIRNLLSGKKSSSKSNSSKKNVILKPSSDKDVLGSSEISVSDPNVDSLLISAPICGANATIGVLSEKEVVSRSSHDRVILSTGDEEAHAPAVANVGSQEDLEQLRLTEAAIKVQAACRGHQARRTFQTVKGIVQLQAFIRGHLIRRQAVSALYCVKGIVKFQALARGYNVRRSDIGLAVLKIRKDTQSSNSIEVVTSTQAEKLSESVFVHKLLASSSYAVPLSLTCDPVEPNLAWKWLDLWSRSHFWAPLPELKKKLDSVPDEKSGSYQTVERGQVKRNTRKSPAVKADDGSISGSNKYKQRPKKDSNHPLLSAQEQPQKEIEKTSLKKTRMQNVSDRCEDVNEKRKHSNRKISDHTITDVSEQVPSASSEKMKDLTVHKSKGSDPEKDLGQQAKGENDNEPHNDPIAVLQTSVENGRDERIQGVSKDLNGGDNCISNNCQRRASLPANFNDQDNELHNTPRVPSYMAPTESAKAKLKGQGSPRFATDLVDKNSITRRHSLSSSLNGRSGSFSPRAERLITMSSRGVIRTDRSLSSSRDGTEKLIQPQWRR 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3842g00018 560 ProSiteProfiles IQ motif profile. 139 166 IPR000048 GO:0005515
Gabi3842g00018 560 MobiDBLite consensus disorder prediction 15 32 - -
Gabi3842g00018 560 Pfam IQ calmodulin-binding motif 139 156 IPR000048 GO:0005515
Gabi3842g00018 560 Pfam IQ calmodulin-binding motif 165 181 IPR000048 GO:0005515
Gabi3842g00018 560 Pfam IQ calmodulin-binding motif 116 136 IPR000048 GO:0005515
Gabi3842g00018 560 MobiDBLite consensus disorder prediction 267 415 - -
Gabi3842g00018 560 MobiDBLite consensus disorder prediction 330 367 - -
Gabi3842g00018 560 MobiDBLite consensus disorder prediction 507 560 - -
Gabi3842g00018 560 MobiDBLite consensus disorder prediction 535 552 - -
Gabi3842g00018 560 PANTHER IQ-DOMAIN 5-RELATED 1 517 - -
Gabi3842g00018 560 Coils Coil 341 361 - -
Gabi3842g00018 560 MobiDBLite consensus disorder prediction 382 411 - -
Gabi3842g00018 560 Gene3D - 114 193 - -
Gabi3842g00018 560 MobiDBLite consensus disorder prediction 1 45 - -
Gabi3842g00018 560 SMART iq_5 137 158 IPR000048 GO:0005515
Gabi3842g00018 560 SMART iq_5 114 136 IPR000048 GO:0005515
Gabi3842g00018 560 SMART iq_5 162 184 IPR000048 GO:0005515
Gabi3842g00018 560 Pfam Protein of unknown function (DUF4005) 462 535 IPR025064 -
Gabi3842g00018 560 ProSiteProfiles IQ motif profile. 115 143 IPR000048 GO:0005515
Gabi3842g00018 560 Coils Coil 558 560 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3842g00018 Gabi-Chr3842 182964 188316 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3842g00018 4 560 IQD Protein Family AT1G14380 33.719 3.71e-80 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3842g00018 - - aprc:113869184 825.083