Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3842g00016 ATGGGGAAAGGAAGAAGTCCTGGGAAATGGATCAGGAACTTACTCTCGGGGAAGAAATCATCATCAAAGTCTAATTCATCAAAGAAGAATGTTATTTTAAAACCTTCAAGTGACAAGGATGTGCTGGGGTCTTCTGAGATATCCGTGTCTGATCCAAATGTGGATTCTTTGCTGATATCCGCGCCAATTTGTGGAGCTAATGCAACTATAGGAGTGCTTTCAGAAAAGGAAGTGGTTAGTAGGTCATCACATGATAGGGTTATTCTTTCAACTGGAGATGAAGAGGCTCATGCACCAGCTGTTGCTAATGTTGGATCTCAAGAAGATCTTGAGCAACTCAGGCTTACAGAAGCAGCTATAAAAGTTCAGGCGGCTTGTAGAGGCCATCAGGCTCGTCGAACATTTCAAACAGTCAAAGGTATCGTACAACTGCAAGCTTTTATTCGTGGCCACTTGATTAGAAGACAAGCTGTTTCTGCTTTATACTGTGTTAAGGGAATAGTTAAATTTCAAGCATTGGCTCGTGGTTACAATGTTAGGCGTTCTGATATTGGGCTCGCAGTCCTGAAAATTCGTAAGGATACTCAAAGTTCAAATTCTATTGAGGTAGTTACATCTACTCAGGCAGAGAAGCTGTCAGAAAGTGTGTTTGTTCACAAGCTTCTGGCTTCATCGTCCTATGCAGTTCCTCTATCTCTCACTTGTGATCCCGTAGAACCTAATTTGGCTTGGAAATGGCTTGACCTCTGGTCAAGGTCACACTTTTGGGCACCACTTCCTGAACTGAAGAAGAAACTTGACTCAGTGCCTGATGAGAAAAGTGGCAGTTACCAAACAGTTGAAAGGGGACAAGTTAAAAGAAATACTCGGAAATCTCCTGCTGTGAAAGCTGACGATGGCTCAATTTCAGGTTCTAACAAATATAAACAGCGTCCAAAAAAGGACTCAAACCACCCATTGCTTTCAGCTCAGGAACAACCACAAAAGGAAATCGAGAAAACTAGTCTTAAAAAAACTCGCATGCAAAATGTTTCAGACAGATGTGAGGATGTTAATGAGAAAAGAAAACATAGCAATAGAAAAATTTCAGATCATACTATCACTGATGTTTCAGAGCAGGTCCCCAGTGCCTCTTCAGAGAAAATGAAAGATTTAACGGTGCATAAGTCAAAAGGGTCTGATCCTGAGAAAGATCTTGGACAGCAAGCAAAAGGGGAGAATGATAATGAGCCACATAATGATCCTATTGCTGTCTTGCAGACTAGTGTGGAGAATGGAAGAGATGAAAGAATTCAAGGAGTCAGTAAGGACTTGAACGGTGGTGACAATTGTATCAGCAACAATTGCCAAAGAAGGGCTTCACTACCTGCTAATTTTAATGATCAGGATAATGAGTTACATAACACACCAAGAGTGCCCAGTTATATGGCTCCTACTGAATCTGCCAAAGCTAAGCTTAAAGGACAAGGTTCCCCAAGATTTGCTACTGATTTGGTTGACAAAAACAGTATAACCAGGCGGCATTCACTTTCATCTTCGCTTAATGGAAGGTCAGGTTCATTTTCCCCAAGAGCAGAAAGACTCATAACCATGAGCAGCAGAGGAGTTATAAGGACTGATAGATCTCTGTCATCTTCAAGGGATGGGACTGAGAAGTTGACCCAACCTCAGTGGAGAAGGTGA 1683 0.4183 MGKGRSPGKWIRNLLSGKKSSSKSNSSKKNVILKPSSDKDVLGSSEISVSDPNVDSLLISAPICGANATIGVLSEKEVVSRSSHDRVILSTGDEEAHAPAVANVGSQEDLEQLRLTEAAIKVQAACRGHQARRTFQTVKGIVQLQAFIRGHLIRRQAVSALYCVKGIVKFQALARGYNVRRSDIGLAVLKIRKDTQSSNSIEVVTSTQAEKLSESVFVHKLLASSSYAVPLSLTCDPVEPNLAWKWLDLWSRSHFWAPLPELKKKLDSVPDEKSGSYQTVERGQVKRNTRKSPAVKADDGSISGSNKYKQRPKKDSNHPLLSAQEQPQKEIEKTSLKKTRMQNVSDRCEDVNEKRKHSNRKISDHTITDVSEQVPSASSEKMKDLTVHKSKGSDPEKDLGQQAKGENDNEPHNDPIAVLQTSVENGRDERIQGVSKDLNGGDNCISNNCQRRASLPANFNDQDNELHNTPRVPSYMAPTESAKAKLKGQGSPRFATDLVDKNSITRRHSLSSSLNGRSGSFSPRAERLITMSSRGVIRTDRSLSSSRDGTEKLTQPQWRR 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3842g00016 560 ProSiteProfiles IQ motif profile. 139 166 IPR000048 GO:0005515
Gabi3842g00016 560 Gene3D - 114 193 - -
Gabi3842g00016 560 MobiDBLite consensus disorder prediction 15 32 - -
Gabi3842g00016 560 Pfam IQ calmodulin-binding motif 139 156 IPR000048 GO:0005515
Gabi3842g00016 560 Pfam IQ calmodulin-binding motif 116 136 IPR000048 GO:0005515
Gabi3842g00016 560 Pfam IQ calmodulin-binding motif 165 181 IPR000048 GO:0005515
Gabi3842g00016 560 MobiDBLite consensus disorder prediction 505 520 - -
Gabi3842g00016 560 MobiDBLite consensus disorder prediction 267 425 - -
Gabi3842g00016 560 MobiDBLite consensus disorder prediction 330 367 - -
Gabi3842g00016 560 Coils Coil 341 361 - -
Gabi3842g00016 560 MobiDBLite consensus disorder prediction 382 411 - -
Gabi3842g00016 560 MobiDBLite consensus disorder prediction 1 45 - -
Gabi3842g00016 560 MobiDBLite consensus disorder prediction 535 560 - -
Gabi3842g00016 560 PANTHER IQ-DOMAIN 5-RELATED 1 517 - -
Gabi3842g00016 560 SMART iq_5 137 158 IPR000048 GO:0005515
Gabi3842g00016 560 SMART iq_5 114 136 IPR000048 GO:0005515
Gabi3842g00016 560 SMART iq_5 162 184 IPR000048 GO:0005515
Gabi3842g00016 560 MobiDBLite consensus disorder prediction 503 560 - -
Gabi3842g00016 560 Pfam Protein of unknown function (DUF4005) 462 535 IPR025064 -
Gabi3842g00016 560 ProSiteProfiles IQ motif profile. 115 143 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3842g00016 Gabi-Chr3842 182929 188316 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3842g00016 4 560 IQD Protein Family AT1G14380 33.884 6.14e-81 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3842g00016 - - aprc:113869184 823.157