Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3842g00015 ATGAAGAATTTCTTGGTTTCTTTAAATTACTTGTTTCCTGCAATCGTTGCAATCATTCTTGTGCTGCTTACTCCAATTCCCAGTGCACAGCTAACAACAAGTGAGAATAGAATTCTTCTTCAAGTTCAGAAGCTTCTTGAATATCCTCAAGTTCTGCAAGGATGGACCAACTGGACCAACTTCTGCTACCTCCCTCCCTCACCTTCTCTCAAGATTGTTTGCTCCAATGGTCATGTAACCGAATTAACTATCATTGGAAACAAGACTGAAACTCTTTCAGAAAGATTCTCCATTGATTCTTTCTTTACTGTCTTGACAAAGCTTTCAAACTTGAAGGTGTTGTCATTGGTGTCCCTTGGTTTGTGGGGTCCTTTACCATCCAAGATTAACCGGTTCTGGTCTCTTGAAGTGCTGAACATTAGCTCAAATTTCATTTATGGTGAAATCCCATCATCAATCTCCTCTCTGAAAGATCTCAGGAGTCTTGTTTTAGCTGATAATCTGTTCAATGGGAGTGTTCCTGATCTTAGAAGACTAGCTTCTCTTCGAGAGCTCAATTTGGGTGGCAACAAATTGGGTCCTGAGTTCCCTTCAATTGACAAGTATCTTGTGAGGATAATCTTGAAAAACAATTCTCTGAGATGTCAAATTCCTCCCCAACTAGTGCAAGTTGATAAACTTGAGCTATTTGACATCTCTTCCAATGAAATATTTGGTAACATCCCATCATTTGTTTTCTCTCTTCCACTCCTCCAGTACCTAAACATGGCTGCAAACAAACTAACCGGTTCCCTTTCTGTGAATATATCATGTAATTCTGCTCTATCATTTGTTGATATCTCACACAATTTCCTAGTAGGAAAATTGCCATCCTGTTTTGGTTCAAAGTCCTCAAATAGAACAATACTGTATTCTGGGAATTGTTTTTCAACCAGAAGCTTAAGTGATCAACATCCATCTTCATATTGCAAGCAATTGGAGGTCTTAGCCGTTAAGCCACCAGTTAGAAAAAAGGAGGAGGAGTCGCATATGCAAATAGGCCTACTACTTGGTATTATTGGAGGTGTTGTAGGAATTGCAGGGCTTCTGGTTCTACTCATTCTGTTCAACTTGAGGAAGTCCAAAGCTGAAAGAGCAGATAGTAATTTAGACACATCAATTTCTGATAAATTTTCTGTCCGTGCGTATCCAAGACCATATATTGATGAAAGACATGTTCCCCAGCCAATGAGACTAGGTGCACTTGGATTCCCATCATACAGAATTTTTACATCAGAAGAAATTGAAGATACAACAAACAACTTCGACCCATCAAATCTAATAGGAGAAGGATCACAGGATCAGCTATATAAGGGCTGGCTCATAGATGGCTCAATGGTTATAGTTAATAGAGTAAAACTAAAGCAAAAGAGTTTGTCCAAAAACAGCATTCAGAACTTGAAGGTATTACCCTATTTAAGGCATAGGCATTTGGTGAGTGTTCTAGGACACACTGTCATTACTTATCAGGACCATCCCCAAACGACAAGCACAATATTCATTGTATTTGAACACATCCCAAACGTGTCGTTGAGGGATCATCTTACAGATAGGAGAAAAAAGGAAATGCTGAAATGGCCACAGAGAATGACAATCATCACAGGCATTGCAAGAGGAATCCAGTTCTTACACACTGGAGTTAATCCTGGCATATTTGGCAACAATATAAAGATTGAAAACATTCTGTTGGATGATAGTCTCAATGCAAAAGTTAGTGGATACAGCATTCCATTCACTTCCAAGGGAGGTCTTGACAGCACACTTAAAGAACAAAGTGCCCCCAATCATAATGGTACCAATGATGCAGAAAAGGAAGATATCTATCAGTTGGGTGTTACTCTACTTGAAATTATCACTGGCAAAATAATTACATCTTCCAGTGAAGTAGAGGAGCTGAAGAATGAGCTGGAGAGAGGTTTATCAGAAGCTGCATCGCCAACACTAAGGGGATCAATCGATCCTTCCCTCCGTGGAACTTATGTATATGAATCATTGAGGACTGCAGTTCAGATCACCATCAATTGTCTCAGCAAGGTTCCCTGTAATCGCCCTTCAATAGAGGATATTCACTGGAATATGCAGTACTCAGTGCAGGTTCAAGAGGCGAGTGGAAACCTCAATACTAAATTGTAA 2172 0.3964 MKNFLVSLNYLFPAIVAIILVLLTPIPSAQLTTSENRILLQVQKLLEYPQVLQGWTNWTNFCYLPPSPSLKIVCSNGHVTELTIIGNKTETLSERFSIDSFFTVLTKLSNLKVLSLVSLGLWGPLPSKINRFWSLEVLNISSNFIYGEIPSSISSLKDLRSLVLADNLFNGSVPDLRRLASLRELNLGGNKLGPEFPSIDKYLVRIILKNNSLRCQIPPQLVQVDKLELFDISSNEIFGNIPSFVFSLPLLQYLNMAANKLTGSLSVNISCNSALSFVDISHNFLVGKLPSCFGSKSSNRTILYSGNCFSTRSLSDQHPSSYCKQLEVLAVKPPVRKKEEESHMQIGLLLGIIGGVVGIAGLLVLLILFNLRKSKAERADSNLDTSISDKFSVRAYPRPYIDERHVPQPMRLGALGFPSYRIFTSEEIEDTTNNFDPSNLIGEGSQDQLYKGWLIDGSMVIVNRVKLKQKSLSKNSIQNLKVLPYLRHRHLVSVLGHTVITYQDHPQTTSTIFIVFEHIPNVSLRDHLTDRRKKEMLKWPQRMTIITGIARGIQFLHTGVNPGIFGNNIKIENILLDDSLNAKVSGYSIPFTSKGGLDSTLKEQSAPNHNGTNDAEKEDIYQLGVTLLEIITGKIITSSSEVEELKNELERGLSEAASPTLRGSIDPSLRGTYVYESLRTAVQITINCLSKVPCNRPSIEDIHWNMQYSVQVQEASGNLNTKL 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3842g00015 723 FunFam Probable LRR receptor-like serine/threonine-protein kinase At2g02780 408 508 - -
Gabi3842g00015 723 SUPERFAMILY L domain-like 34 315 - -
Gabi3842g00015 723 Gene3D Transferase(Phosphotransferase) domain 1 519 720 - -
Gabi3842g00015 723 Gene3D Ribonuclease Inhibitor 200 345 IPR032675 -
Gabi3842g00015 723 ProSiteProfiles Protein kinase domain profile. 435 706 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3842g00015 723 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 519 721 - -
Gabi3842g00015 723 FunFam Probable LRR receptor-like serine/threonine-protein kinase At2g02780 32 201 - -
Gabi3842g00015 723 Pfam Protein kinase domain 438 702 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3842g00015 723 Gene3D Phosphorylase Kinase; domain 1 412 505 - -
Gabi3842g00015 723 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 202 704 - -
Gabi3842g00015 723 Gene3D Ribonuclease Inhibitor 32 199 IPR032675 -
Gabi3842g00015 723 SUPERFAMILY Protein kinase-like (PK-like) 415 704 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3842g00015 Gabi-Chr3842 175649 178943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3842g00015 29 646 Miscellaneous Gene Families AT2G02780 51.090 0.0 547
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Gabi3842g00015 Pkinase 1.8e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3842g00015 - - gmx:100800018 1000.73