Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3842g00012 ATGCAGGATCAAAAGCTCGAATCAACTAAGGGTGAAATGGGAGAGGTTAGAGAAGAAAACGAGAGGTTGAAGTTCTTATTGGCACGGCTTGTAAATGATTACCAATCACTACAAACGAACTTCTTTGACATCCTTCAACAAGATCATAAACCAGGAGAGGCTACAAATGCTACAAATATAGCAACTATCCATGAAGAAAGTGAACTTGTCTCACTTTCTCTTGGTTTATCATCCAAAGACCAGCCTACCATGGATGAGAAAAAGGGAAACAATAGAACTGAAAATAGAGAAGATGATCAAGAGGATATGGATAAAGGACTTGCACTTGGGTTAGATATCAGATTTAACCCTGTGGTTCATACTGAAGCTGCAACGATTCCCAGCTCTGAAAGTAGCTTTGATGAGGAAGGGAAGGAAGAAGAACCAACTGAGATATGGCCACCCAGTAAAGTTCTTAAGACAACAAAAACTGGAGATAAAAGTGAAGCTTCTCAACATACTCAGCTCAAGAAGACTAGGGTTTCTATTAGAGCCAGATGTGATTCTCAAACGATGAATGATGGGTGCCAGTGGAGAAAATATGGACAAAAAATAGCAAAAGGAAATCCATGCCCCCGAGCCTACTATCGATGCACTGTTTCTCCATCTTGTCCTGTGAGAAAACAGGTGCAAAGATTTGCTGAGGATATGTCTATATTGATAACCACCTATGAAGGAACCCACAATCACCCACTTCCTATTTCAGCCACTGCTATGGCATCCACAACTTCTGCTGCTGCTTCCATGCTTCAATCTCCCTCATTGATTTCACAACAAGGACTAGTGAATTCAGATATAGCCCCCATTATCAATTCTAGTAGTGGTGCTTATAACCCTAATGCTATAAACTTCTCATCTTACCAAATTTCAAGGCCACATCAATTCTACTTCCCCAATTCTTCTATTTCAACCTTGAATTCTCACCCCACAATCACTCTGGACCTTACTGCACCACCAACTTCCTCTCATTCTGGAAATCTTACATCAGCCTTCTCTCATAACATACCAAAACATTCATCAACAAACCTTAATTTTTCCTCAAGTTTCTCTCCTCTACAATCTAGCATGGCACAGTCACCTTGGAGCAGTACTTATAGTGGTTATTTATTCAACTCTGGAACACTAACCCAAAATAGAAACCAAGTTGGTTACATGTTAAACACTGGAAAGCAACCATTTCAAGGGCATCTCCATCAACCTATTTACATGAGCAACAATGCCATTTCTCAACAACAGTCTTCACCGGATTCAATTGTTGCTGCAACCAAGGCGATAGCAACCAACCCAAAATTTCAATCAGCATTAGCCACTGCTCTCACAGCATATGTTGGCAATGGAGCTGGTGGTGATAGGTTAAGAGAAAATCATCATGTTCCTGAGGGTTCATCACTGAACTTGAAGCTAAGTGATGGAGATGTGTCCTACGCTTCTAACCAAAATAACATAGGATATGCATCATCAAGGTACTTGAATATGTCTTCCTCTTCTCTTAACGCTCAAGAAGGAAACTCCATCATTTTTCCACAACCACCACTGTCTAAAAGTTCCTCCGGTTCGTCTTCTAGTAGAAACAACCAACTCTTGGAGCAATGGAAGTGA 1638 0.4072 MQDQKLESTKGEMGEVREENERLKFLLARLVNDYQSLQTNFFDILQQDHKPGEATNATNIATIHEESELVSLSLGLSSKDQPTMDEKKGNNRTENREDDQEDMDKGLALGLDIRFNPVVHTEAATIPSSESSFDEEGKEEEPTEIWPPSKVLKTTKTGDKSEASQHTQLKKTRVSIRARCDSQTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVSPSCPVRKQVQRFAEDMSILITTYEGTHNHPLPISATAMASTTSAAASMLQSPSLISQQGLVNSDIAPIINSSSGAYNPNAINFSSYQISRPHQFYFPNSSISTLNSHPTITLDLTAPPTSSHSGNLTSAFSHNIPKHSSTNLNFSSSFSPLQSSMAQSPWSSTYSGYLFNSGTLTQNRNQVGYMLNTGKQPFQGHLHQPIYMSNNAISQQQSSPDSIVAATKAIATNPKFQSALATALTAYVGNGAGGDRLRENHHVPEGSSLNLKLSDGDVSYASNQNNIGYASSRYLNMSSSSLNAQEGNSIIFPQPPLSKSSSGSSSSRNNQLLEQWK 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3842g00012 545 Gene3D WRKY domain 170 247 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi3842g00012 545 MobiDBLite consensus disorder prediction 81 102 - -
Gabi3842g00012 545 MobiDBLite consensus disorder prediction 124 170 - -
Gabi3842g00012 545 SMART WRKY_cls 185 245 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi3842g00012 545 Pfam WRKY DNA -binding domain 186 244 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi3842g00012 545 MobiDBLite consensus disorder prediction 74 102 - -
Gabi3842g00012 545 FunFam probable WRKY transcription factor 31 170 247 - -
Gabi3842g00012 545 ProSiteProfiles WRKY domain profile. 180 246 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi3842g00012 545 MobiDBLite consensus disorder prediction 518 545 - -
Gabi3842g00012 545 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 5 474 IPR044810 GO:0003700
Gabi3842g00012 545 SUPERFAMILY WRKY DNA-binding domain 179 246 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3842g00012 Gabi-Chr3842 164556 166579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3842g00012 13 331 WRKY Transcription Factor Family AT5G15130 46.377 4.35e-71 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gabi3842g00012 WRKY 5.9e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3842g00012 - - lang:109339108 642.114