Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3842g00011 ATGTTGCAGCTACACTCAATTACCACCAATAAGCCATGCCCAGTCCCAAACCACTGTTATATCACTCCAAAGTCCATTCCTTTAAGGCCTCTTCGTCCTTCTATACACACACCAACCTTTTCCCTCAAACTTCCACCATTCTCTGTCAAATGCCGTCACACTGAGCTCTTCGAACCCAAACCATTCCCCTCACCACCACAACGCCCTCCAGTTGGAGCTTTGCCGCCTAAGGTTTTTGTGGGTCACTCCGTTTACAAAGGGAAGGCTGTACTCACGTTGACTCCTAGGCCTCCGGAATTTGCATCATTGGATTCTGGGGCATTCAAAATATCCAAGGAAGGTTATGTGCTGCTTCAGTTTGCTCCTGCAGTTGGTATGCGCCAGTATGATTGGAACAGAAAGCAGGTATTCTCACTATCAGTGAGTGAAATGGGAACTATAATTAGCCTTGGTGCAAGACAGTCCTGTGAATTTTTTCATGATCCTTCCATGGGAAAAAGTGATGAAGGTAAAGTCAGAAAAGTTTTGAAGGTGGAGCCACTTCCGGATGGTTCTGGTCACTTCTTTAACCTAAGTGTTCAAAACAAGCTTGAGAACACCAACGAAAGCATCATTATTCCTGTTACAAGAGCGGAGTTTGCAGTTTTCAGCTCGATTTTCAATTTTATTATGCCATACCTTCTAGGTTGGCATGCCTTTGCAAATTCCATAATACCACAGGATTCCAGCCGAGTGAATAATGCCAACCCTAGATCCGGAGGAGACTATGAATGGAACAGATAG 783 0.447 MLQLHSITTNKPCPVPNHCYITPKSIPLRPLRPSIHTPTFSLKLPPFSVKCRHTELFEPKPFPSPPQRPPVGALPPKVFVGHSVYKGKAVLTLTPRPPEFASLDSGAFKISKEGYVLLQFAPAVGMRQYDWNRKQVFSLSVSEMGTIISLGARQSCEFFHDPSMGKSDEGKVRKVLKVEPLPDGSGHFFNLSVQNKLENTNESIIIPVTRAEFAVFSSIFNFIMPYLLGWHAFANSIIPQDSSRVNNANPRSGGDYEWNR 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3842g00011 260 Gene3D Transcriptional Coactivator Pc4; Chain A 70 243 IPR009044 GO:0003677|GO:0006355
Gabi3842g00011 260 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 66 260 IPR013742 GO:0003697|GO:0006355|GO:0006952
Gabi3842g00011 260 Pfam Whirly transcription factor 84 218 IPR013742 GO:0003697|GO:0006355|GO:0006952
Gabi3842g00011 260 FunFam Single-stranded DNA-binding protein WHY2, mitochondrial 70 244 - -
Gabi3842g00011 260 SUPERFAMILY ssDNA-binding transcriptional regulator domain 76 260 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3842g00011 Gabi-Chr3842 149402 155333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3842g00011 31 260 Whirly Transcription Factor Family AT1G14410 67.965 2.92e-115 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Gabi3842g00011 Whirly 1.5e-61 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3842g00011 K26559 - pcin:129310571 352.443