Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3842g00008 ATGGCAAAATTGTCCAACTTCTTCTTTTTAGGGTGTTTGTTAGTCATCATACCTACCCTGCATGCCAATGTGAAAGAGGATACCGCATACTTTGAAAAGCAGGCTGAACAAGCTGATTCATATTGGAAGGAAAGAGCAGTAATTGCTGAAAAGGCAAACCTTGAAGCTTTTAATCCTGACCCATTTGCACTCACTGGCAACCTGTCTTCTACTATTAACGAATTCATAGCTGGCAGCCAGACAGGAAGAAGGAACTTGAGGGGGAGAAAACGCGACGGTACATGCTTGGCAACTAACCCCATTGACAGGTGTTGGAGGTGTGACCCCAATTGGGCAAAGAACCGCAAGAAGCTTGCAGATTGTGCGCAAGGTTTTGGCAGAAATACTATTGGTGGAAAGAATGGTCCATTCTATGTGGTAACCGATTCCTCAGATAATGATATGGTGAATCCAAAACCAGGTACCCTTAGGCATGCAGTTACAAGAACTGGTCCCTTGTGGATTATCTTTGCTCGTAGCATGAACATTAGGCTCAACCAGGAGCTCATTATGACAAGTGACAAGACCATTGATGGCAGAGGAGCTGTTGTTTACATTACTAAAGGTGCTGGTATTACCATTCAGTTCGTCAGGAATGTGATCATCCATGGAATCAGGGTCTATGACATTGTGGTTGGCAGTGGTGGACTTATTAGAGATTCTGAGACCCACTATGGTCTAAGGGGTAGGAGTGATGGTGACGGAATTTCCATCTTTGGCTCTAGCAATATTTGGATTGATCATGTTTCCATGAGAAACTGCATGGATGGACTTATTGATGCCATTCAGGGATCCACTGCTATTACCATCTCCAATAACCATTTCACTGACCACAATGAGGTGATGTTGTTTGGTGCCAGTGATGCTTACGATGGTGATAAGATAATGCAAATCACAGTTGCATTCAACCACTTTGGTAAGAGATTGATCCAAAGGATGCCAAGGTGCAGATATGGTTTTGTCCATGTGGTTAACAATGACTACACTCATTGGGAAATGTATGCCATTGGTGGTAGCAAGCATCCTACCATCATTAGTGAGGGTAACCGATTCATAGCCCCTAACAACATTCATGCCAAAGAGATCACAAAGAGAGATTACGCACCAGAGGAAGAGTGGAGTAAATGGCAATGGAGATCAATCAACGATTTGTACATGAATGGAGCATTTTTCAGACAAGCTGGACAGGAACTAGGAAGCAGACCATTCTCAAGGTTGGACATGATGACAGCTAAGCCTGCTTCATATGTGGTTAGACTTACTCGCTATGCTGGCAGCCGTAAATGCGTAGTTGGCAAGCCATGTTAA 1347 0.4373 MAKLSNFFFLGCLLVIIPTLHANVKEDTAYFEKQAEQADSYWKERAVIAEKANLEAFNPDPFALTGNLSSTINEFIAGSQTGRRNLRGRKRDGTCLATNPIDRCWRCDPNWAKNRKKLADCAQGFGRNTIGGKNGPFYVVTDSSDNDMVNPKPGTLRHAVTRTGPLWIIFARSMNIRLNQELIMTSDKTIDGRGAVVYITKGAGITIQFVRNVIIHGIRVYDIVVGSGGLIRDSETHYGLRGRSDGDGISIFGSSNIWIDHVSMRNCMDGLIDAIQGSTAITISNNHFTDHNEVMLFGASDAYDGDKIMQITVAFNHFGKRLIQRMPRCRYGFVHVVNNDYTHWEMYAIGGSKHPTIISEGNRFIAPNNIHAKEITKRDYAPEEEWSKWQWRSINDLYMNGAFFRQAGQELGSRPFSRLDMMTAKPASYVVRLTRYAGSRKCVVGKPC 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3842g00008 448 SMART amb_all 173 370 IPR002022 -
Gabi3842g00008 448 Pfam Pectate lyase, N terminus 38 86 IPR007524 GO:0030570
Gabi3842g00008 448 SUPERFAMILY Pectin lyase-like 99 438 IPR011050 -
Gabi3842g00008 448 PANTHER PECTATE LYASE 18-RELATED 50 446 IPR045032 GO:0030570
Gabi3842g00008 448 Gene3D - 98 440 IPR012334 -
Gabi3842g00008 448 PRINTS Pollen allergen Amb family signature 347 366 IPR018082 -
Gabi3842g00008 448 PRINTS Pollen allergen Amb family signature 419 442 IPR018082 -
Gabi3842g00008 448 PRINTS Pollen allergen Amb family signature 181 197 IPR018082 -
Gabi3842g00008 448 PRINTS Pollen allergen Amb family signature 325 344 IPR018082 -
Gabi3842g00008 448 PRINTS Pollen allergen Amb family signature 245 266 IPR018082 -
Gabi3842g00008 448 PRINTS Pollen allergen Amb family signature 389 413 IPR018082 -
Gabi3842g00008 448 PRINTS Pollen allergen Amb family signature 145 170 IPR018082 -
Gabi3842g00008 448 PRINTS Pollen allergen Amb family signature 121 138 IPR018082 -
Gabi3842g00008 448 Pfam Pectate lyase 184 364 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3842g00008 Gabi-Chr3842 122864 125912 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3842g00008 8 448 Polysaccharide Lyase AT1G14420 59.649 0.0 540
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3842g00008 K01728 - gmx:100796307 754.207