Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi383g00004 ATGGAAGATGAGGAAAAGTTAGCCAGAGTTGAAGAAAACCAACAAAAAGATGCAACATCAAGAGTTTTTCCATGTCTATTCTGTTCAAGAAAGTTTTACAGTTCTCAAGCTTTGGGGGGACACCAAAATGCTCACAAGAAAGAGAGAAGTGCAAGGAAGGCTAAGAGGCCTTCTGAGTACTCACGTGTTTCCTTTGCTTCCCCATTGCCAACCCCTATGGTTTTTGCTCCAACCCATCAACTGGATATTTCAAATCCTTCAATGTTCATCAATGCCCACGCAGCAAATCTCCCTTATCTCCCAAGCCAACAAATCTCGGAACAATTTAGATCAAATAGTGCACCTACATTTGGGAAGGCTGTATATTTTGAGGGAAGTTGTTCAAAAAGTCGATTCTGTGATGAAGATGAATTTTTTTTCATTAATTGGCAAAAGCGTATAAGAAGCAATCACTTCAGCAGGGGTGACATTGCTCATCATATATCATTGATAAGTAACAATCAAAATCTTGGAATTTGGAATGACGATACAGAGAAAGATCAAAAGCTTGATTTGTCTCTTCGTCTGTAA 570 0.3895 MEDEEKLARVEENQQKDATSRVFPCLFCSRKFYSSQALGGHQNAHKKERSARKAKRPSEYSRVSFASPLPTPMVFAPTHQLDISNPSMFINAHAANLPYLPSQQISEQFRSNSAPTFGKAVYFEGSCSKSRFCDEDEFFFINWQKRIRSNHFSRGDIAHHISLISNNQNLGIWNDDTEKDQKLDLSLRL 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi383g00004 189 ProSiteProfiles Zinc finger C2H2 type domain profile. 23 50 IPR013087 -
Gabi383g00004 189 ProSitePatterns Zinc finger C2H2 type domain signature. 25 45 IPR013087 -
Gabi383g00004 189 SUPERFAMILY beta-beta-alpha zinc fingers 20 50 IPR036236 -
Gabi383g00004 189 Gene3D Classic Zinc Finger 3 68 - -
Gabi383g00004 189 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 11 189 IPR044246 GO:0009788
Gabi383g00004 189 MobiDBLite consensus disorder prediction 39 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi383g00004 Gabi-Chr383 118795 119364 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi383g00004 1 189 C2H2 Transcription Factor Family AT5G48890 33.163 1.62e-16 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi383g00004 - - gmx:100527084 239.965