Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi383g00003 ATGGTGGTAATAGAGCATGAAGAGAGTGAGGATCGTAACGCGAAACCCTCCAATGCTGGAGCCGGCAACGAAGCTTCCGACGGCTTCGAAACCGCCAGCGACGCCGATCTCGGAAGCGACGGCGAAGAAGGCGGAGCTAGCAGCCGGAAAGAACAGGAGCATGGTGAGCAACACCAGCATCAGCAGACAGAGCAGGAGCAGGAGCAGGGTGTTGCTCTAAGAAGCGATTCGTCCGAGGATGCTTCGGTCAATGAGGAGGAAATGAGACAGAAAGCATTGGTTCAAGCAAATGTAGCAAAGGCAGAAGGTAACAGATGTTTTGTAGATGGGAAGTATGAGGAGGCATTATCACAATATGAACTTGCTTTACAAGTTGCACCAGACATGCCTTCATCTGTGGAAATACGCTCTATATGCCATGCAAATCGTGGTGTGTGCTTCCTGAAACTGGGAAAATATGAAAACACAATAAAAGAATGCACAAAAGCATTAGAACTGAATCCTGCGTATGTTAAAGCTTTGGTAAGAAGAGGAGAGGCTCATGAAAAGCTTGAGCATTTTGATGAGGCCATTGCTGATATGAAAAAAATCTTGGAACTTGATCCCTCAAATGATCAAGCTGGGAAAGTCATTCGCAGGCTAGAGCCCCTTGCTGCAGAAAAACGGGAAAAGATGAAGGAAGAAATGATTGGAAAACTTAAAGATATGGGCAATTCTGTCTTGGGCCGCTTCGGGATGAGTGTAGACAATTTTAAGGCAGTCAAAGATCCAAACACTGGTTCCTATTCTGTCTCATTCCAACGCTAA 807 0.461 MVVIEHEESEDRNAKPSNAGAGNEASDGFETASDADLGSDGEEGGASSRKEQEHGEQHQHQQTEQEQEQGVALRSDSSEDASVNEEEMRQKALVQANVAKAEGNRCFVDGKYEEALSQYELALQVAPDMPSSVEIRSICHANRGVCFLKLGKYENTIKECTKALELNPAYVKALVRRGEAHEKLEHFDEAIADMKKILELDPSNDQAGKVIRRLEPLAAEKREKMKEEMIGKLKDMGNSVLGRFGMSVDNFKAVKDPNTGSYSVSFQR 268
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gabi383g00003 268 SMART tpr_5 96 129 IPR019734 GO:0005515
Gabi383g00003 268 SMART tpr_5 137 170 IPR019734 GO:0005515
Gabi383g00003 268 SMART tpr_5 171 204 IPR019734 GO:0005515
Gabi383g00003 268 ProSiteProfiles TPR repeat profile. 137 170 IPR019734 GO:0005515
Gabi383g00003 268 MobiDBLite consensus disorder prediction 43 63 - -
Gabi383g00003 268 Coils Coil 84 104 - -
Gabi383g00003 268 Pfam Tetratricopeptide repeat 139 169 IPR001440 GO:0005515
Gabi383g00003 268 Pfam Tetratricopeptide repeat 172 204 IPR013105 -
Gabi383g00003 268 ProSiteProfiles TPR repeat profile. 96 129 IPR019734 GO:0005515
Gabi383g00003 268 SUPERFAMILY TPR-like 96 211 IPR011990 GO:0005515
Gabi383g00003 268 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 4 268 - -
Gabi383g00003 268 Gene3D Tetratricopeptide repeat domain 54 232 IPR011990 GO:0005515
Gabi383g00003 268 ProSiteProfiles TPR repeat profile. 171 204 IPR019734 GO:0005515
Gabi383g00003 268 MobiDBLite consensus disorder prediction 1 89 - -
Gabi383g00003 268 MobiDBLite consensus disorder prediction 64 78 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gabi383g00003 Gabi-Chr383 112437 118053 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi383g00003 96 227 Calmodulin-binding Proteins AT3G25230 39.286 1.11e-15 74.7