Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3839g00003 ATGAAGCCATTTATCTTGTTGAATCGTCCTGATACCGAGTTCAATTGTTCACAAGTTGATTCTAATCACTCAATGGCTCATGCTCCTTATCATTATAGTGACCCAATTTTCGCCAGTTCATTAGTTGCTTATGGACAACAGGCTATTAATCAACCCCAACTGTTGCCCCAGATGCTGGGATTAACATCCACCAGAGTTGCATTACCACTTGATCTTGCAGATGATGGGCCCATTTATGTTAATGCGAAACAATACCATGGTATACTTAGAAGACGACAATCACGTGCAAAGCTTGAGGCTAAGAACAAACTCATCAAAAGTCGTAAGCCATATCTCCACGAGTCTCGTCACCGCCATGCCTTGAATAGGGTCAGGGGATCTGGAGGGAGATTTCTCAGCAAAAAACAGCTTGCACAGTCTAATGCAGAACTTGTCAATGGTGCACATTCTGGCTCTGAACCTGTCAACATATTATATCAAAAGAAAGATGCATCAAAGGGGGAAAGTAATTCCTCAAGAACTGAAGAAAATGCATCATCTTCCATCACAACCTGCTTTGACAGAACATGTTTATCCAGTAATAGTGTCAATTTTAGGCATCCTGAGCGCATGTTTCTTGGGAACTCCTCAAACATGGGTGGAGGAGCACCACCACAATGCAGTGGGGGAATCACCTTTGGTGGAACAAAGCAACGTGCTTCAGTTGTCCGGTGA 714 0.4328 MKPFILLNRPDTEFNCSQVDSNHSMAHAPYHYSDPIFASSLVAYGQQAINQPQLLPQMLGLTSTRVALPLDLADDGPIYVNAKQYHGILRRRQSRAKLEAKNKLIKSRKPYLHESRHRHALNRVRGSGGRFLSKKQLAQSNAELVNGAHSGSEPVNILYQKKDASKGESNSSRTEENASSSITTCFDRTCLSSNSVNFRHPERMFLGNSSNMGGGAPPQCSGGITFGGTKQRASVVR 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3839g00003 237 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 77 131 IPR001289 GO:0003700|GO:0006355
Gabi3839g00003 237 ProSitePatterns NF-YA/HAP2 subunit signature. 79 99 IPR018362 GO:0003677|GO:0016602
Gabi3839g00003 237 Gene3D - 74 136 - -
Gabi3839g00003 237 ProSiteProfiles NF-YA/HAP2 family profile. 74 134 IPR001289 GO:0003700|GO:0006355
Gabi3839g00003 237 PRINTS CCAAT-binding transcription factor subunit B signature 108 131 IPR001289 GO:0003700|GO:0006355
Gabi3839g00003 237 PRINTS CCAAT-binding transcription factor subunit B signature 77 99 IPR001289 GO:0003700|GO:0006355
Gabi3839g00003 237 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 10 184 IPR001289 GO:0003700|GO:0006355
Gabi3839g00003 237 SMART cbf3 73 134 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3839g00003 Gabi-Chr3839 9046 20674 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3839g00003 17 215 CCAAT-HAP2 Transcription Factor Family AT1G17590 41.827 5.50e-40 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Gabi3839g00003 CBFB_NFYA 4.5e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3839g00003 K08064 - gmx:100793856 341.658