Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3838g00071 ATGGTTCCTTTTGGAGGTAGTTTGATTTATAGAAGAACAAAGAACCCATTGCATTGCTTATGGTTTCAATCCTTAAAATTCTTGAGATATTGTCATTGTGAATGGAATAAAAATTTGAACTTGGCCCCAAACGAGAAGAAGCAAAGCAGGGTGGGGCTTTTTTGGGACTTAGATAATAAACCACCAAACTCAATCCCACCTTATGAAGTTGCCAATAAGCTTAGAGTAGCAGCATCTTCCTTTGGGGTTGTTAGGTATATGGTGGCTTATGCAAATACCCACACTTTTAGCAGTGTCCCCCAAGTTGTCCGTCAGAGGAGGAAAGAGAGGGAACTGTTGAATCGTTTGGAGAATAAGGGTGTCATCAAGCCAAATGAACCTTATCTTTGTAGGGTTTGTGGGAGAAAATTTTATACTAATGAGAAGCTTGTTAACCATTTCAAGCAACTACATGAGAGTGAGCACGTGAAGAGAATGAACCAGATAGGGTCAGCTAAGGGGAGCAGGAGGGTGAAGTTGGTGGCTAAGTATTCTATGAAAATGGAAAAGTATAAGAAGGCTGCAAGTGCTATTCTGACTCCTAAAGTGGGGAATGGTTTGGCAGATGAGCTTAAACGGGCAGGGTTTTGGGTTCAAACTGTTTTGGATAAGCCACAAGCTGCTGATGCTGCATTACAAAGTCACATGGTGGATATCATGGATCATAGACGGGTTGAGTGTATTGTACTTGTATCAGATGATTATGATTTCGTTGATGTAATCAAGGAAGCAAAGCTACGATGTCTCAAGACAGTTGTCATTGGGGATGCTAGTGATGATGGAGTCTTGAAGAGGACTGCACATGCTGCCTTTTCTTGGGAGGAAATTCTGATGGGGAAGGCTAAAAAGGAGGCTGTATCAGTTGTGGAAAACTGGAAAGATCGTGATATTTTGAAAAGGTTAGAGTGGACATACAACCCAGAAGTGGATAAAAAGAAATTCAATGCGGATGATATGGTTAGTGAAGCATCTGAAGATGATATTATAGAAGATATCTGTGATGAAGTTGATGATGCCTATAAAGATGACAAAGGTTCCTGGTGGGAATTAGATACAGACGACGATGTCACAAATTGA 1116 0.4077 MVPFGGSLIYRRTKNPLHCLWFQSLKFLRYCHCEWNKNLNLAPNEKKQSRVGLFWDLDNKPPNSIPPYEVANKLRVAASSFGVVRYMVAYANTHTFSSVPQVVRQRRKERELLNRLENKGVIKPNEPYLCRVCGRKFYTNEKLVNHFKQLHESEHVKRMNQIGSAKGSRRVKLVAKYSMKMEKYKKAASAILTPKVGNGLADELKRAGFWVQTVLDKPQAADAALQSHMVDIMDHRRVECIVLVSDDYDFVDVIKEAKLRCLKTVVIGDASDDGVLKRTAHAAFSWEEILMGKAKKEAVSVVENWKDRDILKRLEWTYNPEVDKKKFNADDMVSEASEDDIIEDICDEVDDAYKDDKGSWWELDTDDDVTN 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3838g00071 371 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 40 368 - -
Gabi3838g00071 371 Gene3D - 42 290 - -
Gabi3838g00071 371 SUPERFAMILY beta-beta-alpha zinc fingers 127 153 IPR036236 -
Gabi3838g00071 371 ProSiteProfiles Zinc finger C2H2 type domain profile. 128 156 IPR013087 -
Gabi3838g00071 371 ProSitePatterns Zinc finger C2H2 type domain signature. 130 151 IPR013087 -
Gabi3838g00071 371 CDD PIN_LabA-like 138 269 - -
Gabi3838g00071 371 Pfam NYN domain 197 280 IPR021139 GO:0004540
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3838g00071 Gabi-Chr3838 594124 597117 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3838g00071 44 371 C2H2 Transcription Factor Family AT4G12240 60.059 4.14e-143 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi3838g00071 NYN 1.7e-07 CL0280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3838g00071 - - gmx:100785257 565.844