Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3838g00057 ATGGGAAGGGGAAGAGTGGAGTTGAAGAGAATTGAGAACAAGATCAACAGGCAAGTGACCTTCGCTAAACGAAGGAACGGGCTTTTGAAGAAAGCTTATGAGCTTTCCGTTCTTTGTGATGCTGAGGTTGCTCTCATCATCTTCTCCAATAGAGGAAAGCTGTACGAGTTTTGCAGCAGTTCAAGCATGCTCAAAACGCTAGAGAGATACCAGAAATGCAACTATGGAGCGCCTGAGGCTAATGTGTCAACAAGGGAAGCCTTGGTATTGGAGTTAAGCAGTCAACAGGAATATTTGAAGCTGAAGGCTCGTTATGAAGCTCTACAACGTTCTCAGAGGAATCTTATGGGAGAAGATCTTGGCCCTCTAAGCAGCAAAGAGCTCGAGTCACTTGAAAGGCAGCTAGATTCGTCTTTGAAGCAAATCAGATCAACAAGGACCCAATTCATGCTGGATCAGCTCACTGATCTTCAACGTAAGCTAGAAGGGTATCAAATAAATCCACTCCAACTGAATCTTAGTGCAGAAGATATGGGATATGGCCGACATCCAGGTCAAACCCACCAGGGTGATGCTCTCTTTCAACCATTGGAGTGTGAGCCAACGTTACAAATTGGATATCAGCATGATCCAGTATCAGTGGTGACTGCAGGCCCAAGCATGAATAATTACATGGCAGGATGGTTACCATGA 693 0.4502 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEANVSTREALVLELSSQQEYLKLKARYEALQRSQRNLMGEDLGPLSSKELESLERQLDSSLKQIRSTRTQFMLDQLTDLQRKLEGYQINPLQLNLSAEDMGYGRHPGQTHQGDALFQPLECEPTLQIGYQHDPVSVVTAGPSMNNYMAGWLP 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3838g00057 230 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Gabi3838g00057 230 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677|GO:0046983
Gabi3838g00057 230 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Gabi3838g00057 230 Pfam K-box region 94 162 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi3838g00057 230 ProSiteProfiles K-box domain profile. 91 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi3838g00057 230 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gabi3838g00057 230 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gabi3838g00057 230 Coils Coil 128 148 - -
Gabi3838g00057 230 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gabi3838g00057 230 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gabi3838g00057 230 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gabi3838g00057 230 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gabi3838g00057 230 FunFam MADS-box transcription factor 7 13 100 - -
Gabi3838g00057 230 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gabi3838g00057 230 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3838g00057 Gabi-Chr3838 492632 498779 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3838g00057 1 230 MADS-box Gene Family AT1G24260 80.258 1.63e-125 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gabi3838g00057 K-box 5.7e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3838g00057 - - gmx:100778931 414.461