Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3838g00052 ATGCCACCTGGTTTCGAATACAATATCAATGATCTTTACCAAGAAGCTAAGAAGAGATGGCTCAAGCCTGTTGAAGTGCTTTACATTTTACGGAATCATGACAAGTGCGAGTTCACCCACCAGCCCCCTCAACAGCCAACTGGTGGATCCTTGTTTCTATTTAATAAAAGAGTCATGCGTTTCTTCCGTAAAGATGGTCATAATTGGCGGAAGAAAAAAGATGGCAAAACTGTGGGAGAAGCACATGAAAGGCTTAAGGTTGGAAATGTTGAAATCCTAAATTGTTACTATGCACATGGAGAGGAGAACCGTACTTTCCAGAGGCGGAGCTATTGGATGTTGGACCCGGAGTATGAGCATATAGTTCTCGTGCATTACAGAGAAACAAGTGAGGGGAAATCCAATTCTGGACCTGTCACACAATTATCACCAGTTTCCTCTTTGTTTAGTCGGAGTCATAGCTCATCTACTTCTCAGAACCCAGTGACAACTTCCATGTTTGGTGAATCAAACGAACCAATTCAAAATTTCTCCAGTCCCGGGTCCTTAGAAGTTACCTCCGATGTATTCATCAGTAACAACATAATGGATAACTTGGATGGAACAGAAGCACAAGCTTTGCGCCAATTGGAGGAACAGTTAAGTTTGAATGAGGATGAAATTGTTAATGATTTAATCCCATACCAAGATCAAAGGGTGGTTCACAAGCAAGATAAATCTGCAGCTTTCTCTGGACCGGATGATTGTGGACAACCTTATGATGGATATAATGGAAGACAAGATGACAGTGGTGAATATTATCATGAATTGCTTGCCCATGATTGCCCCCATGGAAATCAAAATACTTTGTCTTGGACGGAGGTGCTGGAATCATGTAAGCCCTTATCCGTGAGCAAGTTACCAGATCAACATGTATGCGAGGCATTTGGAAATGAAAAGTCACTATCATATTCAGAAAGGGGACTGATTGCCAACTCGGAAAACAGTCACTGGCTAAACTCCAATAGTAATAATGCTGAAAATTGTATGACTTACTTTAACCTTAATAACTTGATAATTTCTCTTTTTGCATATAATGAAATTTGTTCCACCTCTGATTTGTGTCCCATATCACCAGCTGTCTTCTCATTTCCTCCAGACGTTGGTGAAGTCAAATTTCCTCCATATTCTTTGGTAGAAACTCAAGGAATTAATTCTGAGTACTATGCAACATTGTTTGACCCATTCCAAATTCAAGAACCTCTGCATACGTTAAGCTTGACTGTTCCACAGAAACAGAAATTTACAATTAAGGCAGTCTCCCCAGAATGCTGTTATGCCACTGAGACTACAAAGGTCTTCATTATTGGGACATTTCTCTGTCTTCCCTTCGAATCTACGTGGGCTTGTATGTTTGGTGATGTTGAAGTTCCTGCTGAGATCATTCAGGATGGTGTAATCTGTTGTGAAGCTCCATCACATCTTCTTGGAAAGGTTACTTTGTGCATTACTTCAGGAAATCGGGAGCCCTGCAGTGAAGTCAGGGAATTTGAGTTTCGTAACAAGACCAATAGTTGCTCTCGTTGTGATTCATTGGAAACAGAAGCTGCAAGAAGTCCTCAAGAATTGTTATTACTAGTTCAATTTGCACAAATGCTCGTTTCTGCTTCAACTATAAAAGATGACAACATAGAATCTGGAAGTGATCTTCAAAAGAAACAGAAAGCAGATGATGATTCATGGAGCCATATTATAGAGGCTCTTCTAGATGGTAGCGGAACTTCATCTGGTACTACTGATTGGCTTCTTGAAGAGCTGCTGAAGGATAAGCTGCAGCTCTGGCTTTCTTCCAAATCCCATGAAAGAGATGAAGGGACAGGCTGTTCCTTGTCCAAGAAAGAGCAGGGAATTATACACATGGTTTCTGGGTTGGGTTTTGAGTGGGCCTTGAACCCCATTCTCAGTTGTGGTGTGAATATAAATTTTCGTGACATCAATGGATGGACTGCTCTACATTGGGCTGCACGGTTTGGAAGGGAAAAAATGGTTGCTTCACTTATAGCTTCGGGTGCATTTGCTGGAGCAGTAACAGATCCAACTGCACAAGATCCAACCGGTAAAACTGCTGCATCTATTGCAGCCAGCAGTGGCTACAAGGGACTAGCAGGTTATCTTTCGGAGGTAGATCTAACAAGCCATCTGTCATCCCTCACCCTGGAAAAGAGTGAGATTTCTAAAGGTTCCGCTGAGCTGGCAGCCGAGTTAACTGTCAGTAGTGTCTCTGAGGATAATCTTGTAGCCGGTGAGGATCAGGTTTCACTAAAAGATACCTTGGGAGCTGTCAGAAATGCAGCTTTGGCAGCTGCACTGATACAAGCTGCTTTTCGAGCACTTTCTTTCAGAAAACGGAGAGAGAGAGAAGCTGCCGCGGCTTCTGCTGGTCTAGATGGATATGGTATGAATGCAGGTAGCATTGATGATACCATTTCATTGCTTCCTCCTATGTCAAAACTTAGCTCTCGGAGCTTAGCTGCCTTATCAATTCAGAAGAAATATCGAGGTTGGAAGGGTCGCAAAGAATTCTTGGCATTGCGCCAAAAAGTAGTAAAGATACAGGCTCATGTGAGGGGTTACCAGGTTCGGAAACATTATAAGCTAATAATATGGGCAGTTGGAGTCTTGGACAAGGTTGTGCTACGATGGCGGAGAAAAGGAGCTGGTTTACGAGGTTTCCGACAAGAGATGGAGTCATTGGATGAAAGTGATGACGAAGATTTCCTCAGGGTATTCAGAAAAGAGAAAGTACATGTAGCAATTGAAAAGGCTTTTTCTCGGGTGCTTTCCATGGTCCATTCTACCCATGCTCGTCAGCAATATAGCCGCATGCTTGAGATGTATCGTCAAGCCAAGGCTGAAGTTGGCAGCACGAGTGATGAAGCACCTTTAGGGGCTGCTTCCAATATAGAAGATGATGATGATGATCTATACCAATTGACATAG 2979 0.4256 MPPGFEYNINDLYQEAKKRWLKPVEVLYILRNHDKCEFTHQPPQQPTGGSLFLFNKRVMRFFRKDGHNWRKKKDGKTVGEAHERLKVGNVEILNCYYAHGEENRTFQRRSYWMLDPEYEHIVLVHYRETSEGKSNSGPVTQLSPVSSLFSRSHSSSTSQNPVTTSMFGESNEPIQNFSSPGSLEVTSDVFISNNIMDNLDGTEAQALRQLEEQLSLNEDEIVNDLIPYQDQRVVHKQDKSAAFSGPDDCGQPYDGYNGRQDDSGEYYHELLAHDCPHGNQNTLSWTEVLESCKPLSVSKLPDQHVCEAFGNEKSLSYSERGLIANSENSHWLNSNSNNAENCMTYFNLNNLIISLFAYNEICSTSDLCPISPAVFSFPPDVGEVKFPPYSLVETQGINSEYYATLFDPFQIQEPLHTLSLTVPQKQKFTIKAVSPECCYATETTKVFIIGTFLCLPFESTWACMFGDVEVPAEIIQDGVICCEAPSHLLGKVTLCITSGNREPCSEVREFEFRNKTNSCSRCDSLETEAARSPQELLLLVQFAQMLVSASTIKDDNIESGSDLQKKQKADDDSWSHIIEALLDGSGTSSGTTDWLLEELLKDKLQLWLSSKSHERDEGTGCSLSKKEQGIIHMVSGLGFEWALNPILSCGVNINFRDINGWTALHWAARFGREKMVASLIASGAFAGAVTDPTAQDPTGKTAASIAASSGYKGLAGYLSEVDLTSHLSSLTLEKSEISKGSAELAAELTVSSVSEDNLVAGEDQVSLKDTLGAVRNAALAAALIQAAFRALSFRKRREREAAAASAGLDGYGMNAGSIDDTISLLPPMSKLSSRSLAALSIQKKYRGWKGRKEFLALRQKVVKIQAHVRGYQVRKHYKLIIWAVGVLDKVVLRWRRKGAGLRGFRQEMESLDESDDEDFLRVFRKEKVHVAIEKAFSRVLSMVHSTHARQQYSRMLEMYRQAKAEVGSTSDEAPLGAASNIEDDDDDLYQLT 992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3838g00052 992 SUPERFAMILY Ankyrin repeat 630 720 IPR036770 -
Gabi3838g00052 992 SMART CG_1_2 12 130 IPR005559 GO:0003677
Gabi3838g00052 992 ProSiteProfiles IQ motif profile. 834 863 IPR000048 GO:0005515
Gabi3838g00052 992 ProSiteProfiles Ankyrin repeat profile. 659 691 IPR002110 GO:0005515
Gabi3838g00052 992 FunFam Calmodulin-binding transcription activator 4 isoform A 539 724 - -
Gabi3838g00052 992 Gene3D - 834 881 - -
Gabi3838g00052 992 ProSiteProfiles Ankyrin repeat region circular profile. 659 684 - -
Gabi3838g00052 992 Gene3D - 603 728 IPR036770 -
Gabi3838g00052 992 MobiDBLite consensus disorder prediction 967 987 - -
Gabi3838g00052 992 FunFam Calmodulin-binding transcription activator 2 423 517 - -
Gabi3838g00052 992 Pfam IQ calmodulin-binding motif 837 854 IPR000048 GO:0005515
Gabi3838g00052 992 Pfam IQ calmodulin-binding motif 859 878 IPR000048 GO:0005515
Gabi3838g00052 992 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 784 885 IPR027417 -
Gabi3838g00052 992 Gene3D Immunoglobulins 423 518 IPR013783 -
Gabi3838g00052 992 SUPERFAMILY E set domains 429 513 IPR014756 -
Gabi3838g00052 992 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 8 965 - -
Gabi3838g00052 992 ProSiteProfiles IQ motif profile. 857 881 IPR000048 GO:0005515
Gabi3838g00052 992 MobiDBLite consensus disorder prediction 130 168 - -
Gabi3838g00052 992 FunFam Calmodulin-binding transcription activator 2 833 881 - -
Gabi3838g00052 992 Pfam IPT/TIG domain 429 500 IPR002909 -
Gabi3838g00052 992 Pfam CG-1 domain 15 128 IPR005559 GO:0003677
Gabi3838g00052 992 Pfam Ankyrin repeats (3 copies) 642 719 IPR002110 GO:0005515
Gabi3838g00052 992 ProSiteProfiles CG-1 DNA-binding domain profile. 9 135 IPR005559 GO:0003677
Gabi3838g00052 992 SMART iq_5 856 878 IPR000048 GO:0005515
Gabi3838g00052 992 SMART iq_5 833 855 IPR000048 GO:0005515
Gabi3838g00052 992 SMART iq_5 776 798 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3838g00052 Gabi-Chr3838 466233 475470 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3838g00052 5 991 CAMTA Transcription Factor Family AT1G67310 50.476 0.0 877
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Gabi3838g00052 CG-1 2e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3838g00052 K21596 - gmx:100791430 1339.71