Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3838g00051 ATGCCACCTGGTTTCGAATACAATATCAATGATCTTTACCAAGAAGCTAAGAAGAGATGGCTCAAGCCTGTTGAAGTGCTTTACATTTTACGGAATCATGACAAGTGCGAGTTCACCCACCAGCCCCCTCAACAGCCAACTGGTGGATCCTTGTTTCTATTTAATAAAAGAGTCATGCGTTTCTTCCGTAAAGATGGTCATAATTGGCGGAAGAAAAAAGATGGCAAAACTGTGGGAGAAGCACATGAAAGGCTTAAGGTTGGAAATGTTGAAATCCTAAATTGTTACTATGCACATGGAGAGGAGAACCGTACTTTCCAGAGGCGGAGCTATTGGATGTTGGACCCGGAGTATGAGCATATAGTTCTCGTGCATTACAGAGAAACAAGTGAGGGGAAATCCAATTCTGGACCTGTCACACAATTATCACCAGTTTCCTCTTTGTTTAGTCGGAGTCATAGCTCATCTACTTCTCAGAACCCAGTGACAACTTCCATGTTTGGTGAATCAAACGAACCAATTCAAAATTTCTCCAGTCCCGGGTCCTTAGAAGTTACCTCCGATGTATTCATCAGTAACAACATAATGGATAACTTGGATGGAACAGAAGCACAAGCTTTGCGCCAATTGGAGGAACAGTTAAGTTTGAATGAGGATGAAATTGTTAATGATTTAATCCCATACCAAGATCAAAGGGTGGTTCACAAGCAAGATAAATCTGCAGCTTTCTCTGGACCGGATGATTGTGGACAACCTTATGATGGATATAATGGAAGACAAGATGACAGTGGTGAATATTATCATGAATTGCTTGCCCATGATTGCCCCCATGGAAATCAAAATACTTTGTCTTGGACGGAGGTGCTGGAATCATGTAAGCCCTTATCCGTGAGCAAGTTACCAGATCAACATGTATGCGAGGCATTTGGAAATGAAAAGTCACTATCATATTCAGAAAGGGGACTGATTGCCAACTCGGAAAACAGTCACTGGCTAAACTCCAATAGTAATAATGCTGAAAATTCTGTCTTCTCATTTCCTCCAGACGTTGGTGAAGTCAAATTTCCTCCATATTCTTTGGTAGAAACTCAAGGAATTAATTCTGAGTACTATGCAACATTGTTTGACCCATTCCAAATTCAAGAACCTCTGCATACGTTAAGCTTGACTGTTCCACAGAAACAGAAATTTACAATTAAGGCAGTCTCCCCAGAATGCTGTTATGCCACTGAGACTACAAAGGTCTTCATTATTGGGACATTTCTCTGTCTTCCCTTCGAATCTACGTGGGCTTGTATGTTTGGTGATGTTGAAGTTCCTGCTGAGATCATTCAGGATGGTGTAATCTGTTGTGAAGCTCCATCACATCTTCTTGGAAAGGTTACTTTGTGCATTACTTCAGGAAATCGGGAGCCCTGCAGTGAAGTCAGGGAATTTGAGTTTCGTAACAAGACCAATAGTTGCTCTCGTTGTGATTCATTGGAAACAGAAGCTGCAAGAAGTCCTCAAGAATTGTTATTACTAGTTCAATTTGCACAAATGCTCGTTTCTGCTTCAACTATAAAAGATGACAACATAGAATCTGGAAGTGATCTTCAAAAGAAACAGAAAGCAGATGATGATTCATGGAGCCATATTATAGAGGCTCTTCTAGATGGTAGCGGAACTTCATCTGGTACTACTGATTGGCTTCTTGAAGAGCTGCTGAAGGATAAGCTGCAGCTCTGGCTTTCTTCCAAATCCCATGAAAGAGATGAAGGGACAGGCTGTTCCTTGTCCAAGAAAGAGCAGGGAATTATACACATGGTTTCTGGGTTGGGTTTTGAGTGGGCCTTGAACCCCATTCTCAGTTGTGGTGTGAATATAAATTTTCGTGACATCAATGGATGGACTGCTCTACATTGGGCTGCACGGTTTGGAAGGGAAAAAATGGTTGCTTCACTTATAGCTTCGGGTGCATTTGCTGGAGCAGTAACAGATCCAACTGCACAAGATCCAACCGGTAAAACTGCTGCATCTATTGCAGCCAGCAGTGGCTACAAGGGACTAGCAGGTTATCTTTCGGAGGTAGATCTAACAAGCCATCTGTCATCCCTCACCCTGGAAAAGAGTGAGATTTCTAAAGGTTCCGCTGAGCTGGCAGCCGAGTTAACTGTCAGTAGTGTCTCTGAGGATAATCTTGTAGCCGGTGAGGATCAGGTTTCACTAAAAGATACCTTGGGAGCTGTCAGAAATGCAGCTTTGGCAGCTGCACTGATACAAGCTGCTTTTCGAGCACTTTCTTTCAGAAAACGGAGAGAGAGAGAAGCTGCCGCGGCTTCTGCTGGTCTAGATGGATATGGTATGAATGCAGGTAGCATTGATGATACCATTTCATTGCTTCCTCCTATGTCAAAACTTAGCTCTCGGAGCTTAGCTGCCTTATCAATTCAGAAGAAATATCGAGGTTGGAAGGGTCGCAAAGAATTCTTGGCATTGCGCCAAAAAGTAGTAAAGATACAGGCTCATGTGAGGGGTTACCAGGTTCGGAAACATTATAAGCTAATAATATGGGCAGTTGGAGTCTTGGACAAGGTTGTGCTACGATGGCGGAGAAAAGGAGCTGGTTTACGAGGTTTCCGACAAGAGATGGAGTCATTGGATGAAAGTGATGACGAAGATTTCCTCAGGGTATTCAGAAAAGAGAAAGTACATGTAGCAATTGAAAAGGCTTTTTCTCGGGTGCTTTCCATGGTCCATTCTACCCATGCTCGTCAGCAATATAGCCGCATGCTTGAGATGTATCGTCAAGCCAAGGCTGAAGTTGGCAGCACGAGTGATGAAGCACCTTTAGGGGCTGCTTCCAATATAGAAGATGATGATGATGATCTATACCAATTGACATAG 2886 0.4293 MPPGFEYNINDLYQEAKKRWLKPVEVLYILRNHDKCEFTHQPPQQPTGGSLFLFNKRVMRFFRKDGHNWRKKKDGKTVGEAHERLKVGNVEILNCYYAHGEENRTFQRRSYWMLDPEYEHIVLVHYRETSEGKSNSGPVTQLSPVSSLFSRSHSSSTSQNPVTTSMFGESNEPIQNFSSPGSLEVTSDVFISNNIMDNLDGTEAQALRQLEEQLSLNEDEIVNDLIPYQDQRVVHKQDKSAAFSGPDDCGQPYDGYNGRQDDSGEYYHELLAHDCPHGNQNTLSWTEVLESCKPLSVSKLPDQHVCEAFGNEKSLSYSERGLIANSENSHWLNSNSNNAENSVFSFPPDVGEVKFPPYSLVETQGINSEYYATLFDPFQIQEPLHTLSLTVPQKQKFTIKAVSPECCYATETTKVFIIGTFLCLPFESTWACMFGDVEVPAEIIQDGVICCEAPSHLLGKVTLCITSGNREPCSEVREFEFRNKTNSCSRCDSLETEAARSPQELLLLVQFAQMLVSASTIKDDNIESGSDLQKKQKADDDSWSHIIEALLDGSGTSSGTTDWLLEELLKDKLQLWLSSKSHERDEGTGCSLSKKEQGIIHMVSGLGFEWALNPILSCGVNINFRDINGWTALHWAARFGREKMVASLIASGAFAGAVTDPTAQDPTGKTAASIAASSGYKGLAGYLSEVDLTSHLSSLTLEKSEISKGSAELAAELTVSSVSEDNLVAGEDQVSLKDTLGAVRNAALAAALIQAAFRALSFRKRREREAAAASAGLDGYGMNAGSIDDTISLLPPMSKLSSRSLAALSIQKKYRGWKGRKEFLALRQKVVKIQAHVRGYQVRKHYKLIIWAVGVLDKVVLRWRRKGAGLRGFRQEMESLDESDDEDFLRVFRKEKVHVAIEKAFSRVLSMVHSTHARQQYSRMLEMYRQAKAEVGSTSDEAPLGAASNIEDDDDDLYQLT 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3838g00051 961 ProSiteProfiles Ankyrin repeat region circular profile. 628 653 - -
Gabi3838g00051 961 MobiDBLite consensus disorder prediction 936 956 - -
Gabi3838g00051 961 FunFam Calmodulin-binding transcription activator 4 isoform A 508 693 - -
Gabi3838g00051 961 ProSiteProfiles Ankyrin repeat profile. 628 660 IPR002110 GO:0005515
Gabi3838g00051 961 ProSiteProfiles IQ motif profile. 803 832 IPR000048 GO:0005515
Gabi3838g00051 961 SMART CG_1_2 12 130 IPR005559 GO:0003677
Gabi3838g00051 961 SUPERFAMILY E set domains 398 482 IPR014756 -
Gabi3838g00051 961 Pfam IPT/TIG domain 398 469 IPR002909 -
Gabi3838g00051 961 Gene3D Immunoglobulins 392 487 IPR013783 -
Gabi3838g00051 961 ProSiteProfiles IQ motif profile. 826 850 IPR000048 GO:0005515
Gabi3838g00051 961 Gene3D - 572 697 IPR036770 -
Gabi3838g00051 961 Pfam CG-1 domain 15 128 IPR005559 GO:0003677
Gabi3838g00051 961 FunFam Calmodulin-binding transcription activator 2 802 850 - -
Gabi3838g00051 961 FunFam Calmodulin-binding transcription activator 2 392 486 - -
Gabi3838g00051 961 SUPERFAMILY Ankyrin repeat 599 689 IPR036770 -
Gabi3838g00051 961 SMART iq_5 802 824 IPR000048 GO:0005515
Gabi3838g00051 961 SMART iq_5 745 767 IPR000048 GO:0005515
Gabi3838g00051 961 SMART iq_5 825 847 IPR000048 GO:0005515
Gabi3838g00051 961 MobiDBLite consensus disorder prediction 130 168 - -
Gabi3838g00051 961 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 753 854 IPR027417 -
Gabi3838g00051 961 Pfam Ankyrin repeats (3 copies) 611 688 IPR002110 GO:0005515
Gabi3838g00051 961 ProSiteProfiles CG-1 DNA-binding domain profile. 9 135 IPR005559 GO:0003677
Gabi3838g00051 961 Pfam IQ calmodulin-binding motif 828 847 IPR000048 GO:0005515
Gabi3838g00051 961 Pfam IQ calmodulin-binding motif 806 823 IPR000048 GO:0005515
Gabi3838g00051 961 Gene3D - 803 850 - -
Gabi3838g00051 961 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 8 934 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3838g00051 Gabi-Chr3838 466233 475470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3838g00051 5 960 CAMTA Transcription Factor Family AT1G67310 52.208 0.0 894
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Gabi3838g00051 CG-1 1.9e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3838g00051 K21596 - gmx:100791430 1357.04