Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3838g00048 ATGAGTTTGCTACATGTAGTGGGGTTTGGTCTAAAGGTGGGGCATCTACTTTTGGTGCTATGTTGCTGGATTATGTCTGTCATTTACACCAACTGGTTCATTAGGGGTGGAATTATGGACACCAAGATGAGTTTTTTGGGCGGTGGTGGCAAGATGTGGCTCAGAGGTTGGGAGATGATCTTGGGGAACAGTTACAAAATCAACCAACACTATTACCAATGTATTGGGTCCAATAAAGTCAGGAGAACCTTGTGGAGAAAACTTTTGTTGACATGGGTTCTGGGTTGGTCCATAGTATCCTTGTGGATCTTCTGCCGTATGAGCTTACAAGCTACTGAGAAAAGGAAAGAAACTCTGGCCAGCATGTGTGATGAAAGGGCTAGGATGCTTCAGGATCAGTTTAATGTGAGTATGAACCATATCCAAGCCATGTCCATTCTGATCTCAACCTTCCACCATGGCAAGACCCCCTCTGCCATCGACCAGAGAACTTTTGCAAAGTATACAGAAAGAACTGCTTTTGAGAGGCCCCTTACAAGTGGGGTTGCATATGCTATAAGGGTGCTTCATTCTGAAAGGGAACAATTTGAGAAGCAACAAGGCTGGACTATAAAGAGGATGGATACCGTGGAACAGAACCCGGTTCATAAGGATGACTATGTCCCAGAGGCATTGGAGCCATCCCCTATCCATGAAGAATATGCTCCTGTCATCTTTGCACAAGATACAATTTCACACGTGATATCTGTTGACGTGCTTTCTGGAAAGGAAGATGGTGAAAATGTGTTGCGTGCTAGAGAATCAGGGAAAGGGGTTTTAACTGCTCCCTTCAGGTTGCTCAAAACAAATCGTCTAGGGGTTATCCTGACATTTGCAGTCTACAAGAGAGATCTTCCATCAAATGCAACCCCAAATGAAAGGATTCAAGAAACTGATGGGTATCTAGGTGGGGTCTTTGATATCGAGTCTTTAGTGGAGAAATTGCTTCAGCAACTTGCTAGTAAGCAAACCGTAATTGTTAATGTGTATGATACTACGAATCATACCCATCCAATTGCTATGTACGGTTCAAATGTATCAGGCAATGAGTTCCATCATGTCAGCCATCTTAACTTTGGAGATCCTTTCAGGAAACACGAGATGCACTGCAGGTTCAAACAAAAACCACCGTGGCCATGGGTTGCAATAACTACATCCATTGGCATCCTTGTTATTGCACTCCTTGTTGGACATATTTTTCATGCAACTGTGAACCGAATTGCCAAAGTAGAGGATGATTACCATGAGATGATGGAGCTTAAAAAACGAGCTGTGGCAGCTGATGTTGCAAAATCCCAGTTCCTTGCTACTGTTTCCCACGAAATCAGAACACCAATGAATGGAGTTTTAGGGATGTTGGATATACTTATGGACACAGATCTAGATGTAACCCAACAGGAATATGTCAGAACAGCACAGGGCAGTGGAAAAGCTCTGGTGTCAATTATAAATGAGGTTTTGGATCAGGCAAAGATTGAATCTGGTAAGCTAGAGCTCGAGGCTGTGCTGTTTGACATACGGGCAATTTTGGATGATGTGTTGTCACTATTTTCTGAGAAGTCTCACGGAAAAGGAGTAGAGTTGGCAGTTTATGTCTCAGATCGGGTTCCTGAAAAGCTAATAGGTGATCCAGGAAGGTTTCGGCAAATAATCACGAATCTCATGGGTAACTCGATTAAGTTCACAGACAAAGGGCATATCTTTGTCACTATCCATCTTGTTGAGGAGGTTGTCCATTCAATAGAAGTTGAGAAAGAATTAACTTCAAAAGATACCTTGAGTGGTTTCCAGGTTGCTGATAGTCGCAAGAGCTGGGAAGGATTCCAGGCTTTCAGTCAAGAGGGACCTCTTGGTTCTTTCTCATCCTCTTCCAATGATCTCATCAATTTGATTGTATCTGTTGAGGATACAGGTGAAGGTATTCCTCTAGAAGATCAGTCCAAGATCTTCACTCCATTCATGCAGGTAGGTTCATCCATTTCCAGGAAACATGGGGGAACAGGTATTGGTCTAAGCATTAGTAAGTGTTTGGTTGGCCTCATGAACGGGGAAATTGGATTTGCAAGCATACCAAAGATTGGATCCACTTTCACATTTACAGCTGTCTTCACCAATGGAAGTCCAAATTCAAGTGAATGTTGTAAAAGTCAGCAAATCAACAACCAACCTCATCCTGCATCATCAGAATTTCAGGGTATGACTGCATTAGTTATTGACCCTAGACATGTTCGAGCTAAAGTATCGAGATATCACATCCAACGGCTTGGCATTCATGTCGAATTAGTTTCAGATTTAAATCAAGGTTTGTCCACAATAAGCAATGAGAATCAAGTTATTAATATGGTCCTGATTGAACAAGAGGTCTGGGATAGAGACTCAGCCATTTCATCTCACTTTGTCAATAGCACTAGGAAAGTTGATCACGGTGTTCCTCCAAAGCTGTTCATTCTTGTCAATTCTAGTAGTTCTTTTAGAGCAAGTACTGTAACATCAGTTGTTCATAATCCAACTGTCATCTCAAAACCTTTGAGAGCAAGTATGCTTGCTGCTTCGCTACAACGAGCCATGGGTGTTGGGAACAAAGGGAATCCTCGAATTGGGGGGCTTCAGAGTTTGTCTCTCCACCATCTTCTTCTTGGAAGAAAAATTCTAATTGTAGATGACAACAATGTGAACCTCACTGTAGCACAGGCTGCTTTAAAAAAATATGGAGCTGATGTGGTTTGTGTAAAAAGTGGAAAAGATGCCATCTCTTTGCTGAAGCCACCCCATCAGTTTGATGCATGTTTCATGGATATTCAAATGCCAGAAATGGATGGTTTTGAAGCTACACGTAGAATTCGGGAGATTGAACATGCGAACAGAGAAGGGTCTGCTGAAGCCTTTGAAAATAATTCAAACTGGTATGTGCCCATTTTGGCTATGACTGCAGATGTGATCCAGGCTACACATGAGGAATGCCTAAAGAATGGGATGGATGGATATGTTTCAAAACCTTTTGAAGCTGAACAACTTTATAGAGAAGTTTCACGGTTTTTCCTTTCATCATGA 3090 0.4217 MSLLHVVGFGLKVGHLLLVLCCWIMSVIYTNWFIRGGIMDTKMSFLGGGGKMWLRGWEMILGNSYKINQHYYQCIGSNKVRRTLWRKLLLTWVLGWSIVSLWIFCRMSLQATEKRKETLASMCDERARMLQDQFNVSMNHIQAMSILISTFHHGKTPSAIDQRTFAKYTERTAFERPLTSGVAYAIRVLHSEREQFEKQQGWTIKRMDTVEQNPVHKDDYVPEALEPSPIHEEYAPVIFAQDTISHVISVDVLSGKEDGENVLRARESGKGVLTAPFRLLKTNRLGVILTFAVYKRDLPSNATPNERIQETDGYLGGVFDIESLVEKLLQQLASKQTVIVNVYDTTNHTHPIAMYGSNVSGNEFHHVSHLNFGDPFRKHEMHCRFKQKPPWPWVAITTSIGILVIALLVGHIFHATVNRIAKVEDDYHEMMELKKRAVAADVAKSQFLATVSHEIRTPMNGVLGMLDILMDTDLDVTQQEYVRTAQGSGKALVSIINEVLDQAKIESGKLELEAVLFDIRAILDDVLSLFSEKSHGKGVELAVYVSDRVPEKLIGDPGRFRQIITNLMGNSIKFTDKGHIFVTIHLVEEVVHSIEVEKELTSKDTLSGFQVADSRKSWEGFQAFSQEGPLGSFSSSSNDLINLIVSVEDTGEGIPLEDQSKIFTPFMQVGSSISRKHGGTGIGLSISKCLVGLMNGEIGFASIPKIGSTFTFTAVFTNGSPNSSECCKSQQINNQPHPASSEFQGMTALVIDPRHVRAKVSRYHIQRLGIHVELVSDLNQGLSTISNENQVINMVLIEQEVWDRDSAISSHFVNSTRKVDHGVPPKLFILVNSSSSFRASTVTSVVHNPTVISKPLRASMLAASLQRAMGVGNKGNPRIGGLQSLSLHHLLLGRKILIVDDNNVNLTVAQAALKKYGADVVCVKSGKDAISLLKPPHQFDACFMDIQMPEMDGFEATRRIREIEHANREGSAEAFENNSNWYVPILAMTADVIQATHEECLKNGMDGYVSKPFEAEQLYREVSRFFLSS 1029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3838g00048 1029 PRINTS Bacterial sensor protein C-terminal signature 661 671 IPR004358 GO:0016310|GO:0016772
Gabi3838g00048 1029 PRINTS Bacterial sensor protein C-terminal signature 643 657 IPR004358 GO:0016310|GO:0016772
Gabi3838g00048 1029 PRINTS Bacterial sensor protein C-terminal signature 678 696 IPR004358 GO:0016310|GO:0016772
Gabi3838g00048 1029 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 497 713 IPR036890 -
Gabi3838g00048 1029 Gene3D - 891 1028 - -
Gabi3838g00048 1029 SUPERFAMILY CheY-like 893 1024 IPR011006 -
Gabi3838g00048 1029 Pfam His Kinase A (phospho-acceptor) domain 443 508 IPR003661 GO:0000155|GO:0007165
Gabi3838g00048 1029 Gene3D CHASE domain 160 389 IPR042240 -
Gabi3838g00048 1029 SMART REC_2 894 1022 IPR001789 GO:0000160
Gabi3838g00048 1029 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 428 509 IPR036097 GO:0000155|GO:0007165
Gabi3838g00048 1029 SMART HisKA_10 443 508 IPR003661 GO:0000155|GO:0007165
Gabi3838g00048 1029 CDD HisKA 443 504 IPR003661 GO:0000155|GO:0007165
Gabi3838g00048 1029 ProSiteProfiles Histidine kinase domain profile. 450 718 IPR005467 -
Gabi3838g00048 1029 CDD PRTases_typeI 848 923 IPR000836 -
Gabi3838g00048 1029 FunFam Histidine kinase 4 415 506 - -
Gabi3838g00048 1029 ProSiteProfiles Response regulatory domain profile. 747 869 IPR001789 GO:0000160
Gabi3838g00048 1029 SUPERFAMILY CheY-like 742 870 IPR011006 -
Gabi3838g00048 1029 FunFam Histidine kinase 4 160 389 - -
Gabi3838g00048 1029 PANTHER TWO-COMPONENT HISTIDINE KINASE 91 1019 - -
Gabi3838g00048 1029 Pfam CHASE domain 159 355 IPR006189 -
Gabi3838g00048 1029 SMART CHASE_2 156 357 IPR006189 -
Gabi3838g00048 1029 SMART HKATPase_4 555 718 IPR003594 -
Gabi3838g00048 1029 CDD HATPase_EvgS-ArcB-TorS-like 560 716 - -
Gabi3838g00048 1029 Pfam Response regulator receiver domain 896 1021 IPR001789 GO:0000160
Gabi3838g00048 1029 Gene3D - 107 159 - -
Gabi3838g00048 1029 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 555 716 IPR003594 -
Gabi3838g00048 1029 ProSiteProfiles CHASE domain profile. 156 382 IPR006189 -
Gabi3838g00048 1029 CDD REC_hyHK_CKI1_RcsC-like 896 1022 - -
Gabi3838g00048 1029 Gene3D - 507 718 IPR036890 -
Gabi3838g00048 1029 ProSiteProfiles Response regulatory domain profile. 895 1026 IPR001789 GO:0000160
Gabi3838g00048 1029 Gene3D - 411 506 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3838g00048 Gabi-Chr3838 448360 455772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3838g00048 1 1028 Miscellaneous Gene Families AT1G27320 67.939 0.0 1400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gabi3838g00048 CHASE 7.7e-35 CL0165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3838g00048 K14489 - gmx:100776798 1712.2