Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3838g00020 ATGATGGATGTTGCTGAGGTTGAAGAAAATCTGTTTGCAGCAAGTGATGCCAAGTTACATGGAGAAATGTGCAAGGGTCTTTCTGCAATATATTGCAAAATATTTTCATTATTTCCTTCTTTAGAAGCAGCTAGGCCTCGGAGCAAATCTGGAATTCAGGCATTATGTTCATTGCATGTAGCCTTAGAGAAGGCGAAAAATGTTCTCCGGCACTGCTCAGAGTGTAGTAAACTTTACTTGGCTATAACTGGGGATTCTGTTCTTCTAAAATTTGAGAAGGTTAAGTGTGCTCTTGAAGATAGTCTTAAACAAGTGGAAGATATTGTTCCTCAATCCATTGGGTGTCAGATTGAGGAAATTTTGAATGAACTTGCAAGTATGGTATTTGCACTTGACCCATCAGAGAAGCAAGTTGGGGATGATTTAATAGCATTGCTTCAGCAGGGGAGAAAGTTTAACGAATCTAATGACAGTAGTGAACTTGAATGTTTTCATCAGGCTGCTACTAGACTTGGAATCACATCTTCAAGAGTAGCTCTTACTGAAAGAAGAGCTCTTAAAAAACTCATAGAAAGGGCTCGGGCTGAGGAAGACAAGCGGAAGGAATCGATTATTGCATTTCTGTTACACCTTATGAGGAAATACTCCAAGTTATTTAGAAGTGAGTTCTCTGATGATAATGATTCTCAGGGTTCTCAACCTTGTTCTCCCACTGTTCAGAGACCTCTTGAGGATGGTGTTCCTAGCGGCCATTCTCAGGCCTTTGACAGACAGATTTCAAAACTTAGTTCCTTTAATTTTAAGCCAAGTAATAGGAAATCAGGGCAGATGCTCCTTCCACCTGAAGAGTTAAGGTGTCCAATATCTCTGCAACTTATGAGTGATCCTGTTATAATTGCTTCTGGGCAAACATATGAAAGGGTTTGTATAGAAAAATGGTTCAGGGATGGGCACAACACCTGCCCAAAGACTCAACAGAAACTTTCACATCTTTCTTTGACTCCTAATTACTGTGTTAAGGGTCTTGTGGCTAGTTGGTGTGAACATAACGGAGTTCCCATTCCTGAAGGCCCTCCTGAATCTCTTGATTTTAACTACTGGAGATTGGCATTATCAGATTCTGAATCCACAAATTCAAGATCCGTAAACTGTGTCAGCTCTTGCAAGTTGAAGGGTGTCAAAGTTGTTCCTCTAGAAGAGAGTGGCATCGCAGAACAAACTGGGGGAAATGAAACTGAAAGTTTGTCTGCTCAAGAGGAAGATAATGAGCAGTACTCTAGTTTTCTGAAAGTATTGACCGAAGGGAACAATTGGAAGAGTAAGGGTAAAGTGGTAGAACGGTTAAGGCTGTTGCTGCGGGATGATGATGAAGCCAGGATACTTATGGGGGCTAATGGATTTGTTGAAGTACTTTTGCAGTTTCTGCAATCAGCTGTGCATGAAGGGGATGTAATGGCTCAAGAAAGTGGAGCTATGGCTCTGTTCAACCTTGCTGTGAATAACAACAGAAATAAGGAAATTATGATATCAGCAGGAATCTTATCGTTGGTGGAGGAAATGATCTCAAACACTAGTTCGCATGACTGTGCAGCCGCCTTGTATCTGAATCTCTCTTGCCTTGAAGAAGCCAAGACTGTGATTGGAATGAGTCAGGCTGTCCAGTTCCTAATCCAGATTCTTCAAGCCAACACTGAAGTCCAGTGCAAGATAGATTCCCTCCATGCACTCTATAATCTTTCTACTGTGCCCTCCAACATTCCAAACCTCCTTTCATCTGGCATCATCAGTGGCCTACAATCGCTTCTTGTAGGCCAGGGTGATAGCATGTGGACAGAAAAATGTATAGCTGTTTTGATAAATTTGGCTGTTTCTCAAGCTGGAAGAGAGGAAATAATGTCGAGTCTTGGACTCATAACCGCATTGGCTTCGATACTGGATACTGGTGAACTCCTAGAGCAGGAGCAAGCTGCCTCTTGTCTCCTAATTTTGTGTAACAGGAGTGAGAAATGTTGTGAGATGGTACTGCAAGAAGGGGTTATACCTGCATTGGTGTCAATATCAGTGAATGGGACCTCAAGAGGAAGAGAAAAAGCTCAGAAACTCTTGATGCTCTTCAGAGAGCAGAGACAACGTGACCATTCACCAGATAAGACACATGAATGCCCACCTGATGAAACTAGTGATTTGTCCATGCCTCCTCATGAAACGAAACCTTTATGTAAATCAATATCTAGAAGAAAGGTGGGGAAAGCTTTTAGCTTTCTCTGGAAAACTAAGAGCTATTCTGTTTACCAATGTTAA 2301 0.4168 MMDVAEVEENLFAASDAKLHGEMCKGLSAIYCKIFSLFPSLEAARPRSKSGIQALCSLHVALEKAKNVLRHCSECSKLYLAITGDSVLLKFEKVKCALEDSLKQVEDIVPQSIGCQIEEILNELASMVFALDPSEKQVGDDLIALLQQGRKFNESNDSSELECFHQAATRLGITSSRVALTERRALKKLIERARAEEDKRKESIIAFLLHLMRKYSKLFRSEFSDDNDSQGSQPCSPTVQRPLEDGVPSGHSQAFDRQISKLSSFNFKPSNRKSGQMLLPPEELRCPISLQLMSDPVIIASGQTYERVCIEKWFRDGHNTCPKTQQKLSHLSLTPNYCVKGLVASWCEHNGVPIPEGPPESLDFNYWRLALSDSESTNSRSVNCVSSCKLKGVKVVPLEESGIAEQTGGNETESLSAQEEDNEQYSSFLKVLTEGNNWKSKGKVVERLRLLLRDDDEARILMGANGFVEVLLQFLQSAVHEGDVMAQESGAMALFNLAVNNNRNKEIMISAGILSLVEEMISNTSSHDCAAALYLNLSCLEEAKTVIGMSQAVQFLIQILQANTEVQCKIDSLHALYNLSTVPSNIPNLLSSGIISGLQSLLVGQGDSMWTEKCIAVLINLAVSQAGREEIMSSLGLITALASILDTGELLEQEQAASCLLILCNRSEKCCEMVLQEGVIPALVSISVNGTSRGREKAQKLLMLFREQRQRDHSPDKTHECPPDETSDLSMPPHETKPLCKSISRRKVGKAFSFLWKTKSYSVYQC 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3838g00020 766 MobiDBLite consensus disorder prediction 223 252 - -
Gabi3838g00020 766 PANTHER U BOX DOMAIN-CONTAINING 24 709 - -
Gabi3838g00020 766 SUPERFAMILY ARM repeat 425 707 IPR016024 -
Gabi3838g00020 766 MobiDBLite consensus disorder prediction 225 239 - -
Gabi3838g00020 766 SUPERFAMILY RING/U-box 275 355 - -
Gabi3838g00020 766 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
Gabi3838g00020 766 FunFam RING-type E3 ubiquitin transferase 279 353 - -
Gabi3838g00020 766 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 466 512 IPR000225 GO:0005515
Gabi3838g00020 766 SMART arm_5 540 581 IPR000225 GO:0005515
Gabi3838g00020 766 SMART arm_5 455 499 IPR000225 GO:0005515
Gabi3838g00020 766 SMART arm_5 501 539 IPR000225 GO:0005515
Gabi3838g00020 766 MobiDBLite consensus disorder prediction 709 724 - -
Gabi3838g00020 766 Pfam U-box domain 281 350 IPR003613 GO:0004842|GO:0016567
Gabi3838g00020 766 Gene3D - 425 607 IPR011989 -
Gabi3838g00020 766 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
Gabi3838g00020 766 CDD RING-Ubox_PUB 281 333 IPR045210 -
Gabi3838g00020 766 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 353 IPR013083 -
Gabi3838g00020 766 Gene3D - 608 711 IPR011989 -
Gabi3838g00020 766 MobiDBLite consensus disorder prediction 709 738 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3838g00020 Gabi-Chr3838 137253 142017 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3838g00020 2 765 U-box Gene Family AT1G24330 65.681 0.0 1027
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3838g00020 - - gmx:100804344 1302.73