Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3838g00019 ATGATGGATGTTGCTGAGGTTGAAGAAAATCTGTTTGCAGCAAGTGATGCCAAGTTACATGGAGAAATGTGCAAGGGTCTTTCTGCAATATATTGCAAAATATTTTCATTATTTCCTTCTTTAGAAGCAGCTAGGCCTCGGAGCAAATCTGGAATTCAGGCATTATGTTCATTGCATGTAGCCTTAGAGAAGGCGAAAAATGTTCTCCGGCACTGCTCAGAGTGTAGTAAACTTTACTTGGCTATAACTGGGGATTCTGTTCTTCTAAAATTTGAGAAGGTTAAGTGTGCTCTTGAAGATAGTCTTAAACAAGTGGAAGATATTGTTCCTCAATCCATTGGGTGTCAGGCTGCTACTAGACTTGGAATCACATCTTCAAGAGTAGCTCTTACTGAAAGAAGAGCTCTTAAAAAACTCATAGAAAGGGCTCGGGCTGAGGAAGACAAGCGGAAGGAATCGATTATTGCATTTCTGTTACACCTTATGAGGAAATACTCCAAGTTATTTAGAAGTGAGTTCTCTGATGATAATGATTCTCAGGGTTCTCAACCTTGTTCTCCCACTGTTCAGAGACCTCTTGAGGATGGTGTTCCTAGCGGCCATTCTCAGGCCTTTGACAGACAGATTTCAAAACTTAGTTCCTTTAATTTTAAGCCAAGTAATAGGAAATCAGGGCAGATGCTCCTTCCACCTGAAGAGTTAAGGTGTCCAATATCTCTGCAACTTATGAGTGATCCTGTTATAATTGCTTCTGGGCAAACATATGAAAGGGTTTGTATAGAAAAATGGTTCAGGGATGGGCACAACACCTGCCCAAAGACTCAACAGAAACTTTCACATCTTTCTTTGACTCCTAATTACTGTGTTAAGGGTCTTGTGGCTAGTTGGTGTGAACATAACGGAGTTCCCATTCCTGAAGGCCCTCCTGAATCTCTTGATTTTAACTACTGGAGATTGGCATTATCAGATTCTGAATCCACAAATTCAAGATCCGTAAACTGTGTCAGCTCTTGCAAGTTGAAGGGTGTCAAAGTTGTTCCTCTAGAAGAGAGTGGCATCGCAGAACAAACTGGGGGAAATGAAACTGAAAGTTTGTCTGCTCAAGAGGAAGATAATGAGCAGTACTCTAGTTTTCTGAAAGTATTGACCGAAGGGAACAATTGGAAGAGTAAGGGTAAAGTGGTAGAACGGTTAAGGCTGTTGCTGCGGGATGATGATGAAGCCAGGATACTTATGGGGGCTAATGGATTTGTTGAAGTACTTTTGCAGTTTCTGCAATCAGCTGTGCATGAAGGGGATGTAATGGCTCAAGAAAGTGGAGCTATGGCTCTGTTCAACCTTGCTGTGAATAACAACAGAAATAAGGAAATTATGATATCAGCAGGAATCTTATCGTTGGTGGAGGAAATGATCTCAAACACTAGTTCGCATGACTGTGCAGCCGCCTTGTATCTGAATCTCTCTTGCCTTGAAGAAGCCAAGACTGTGATTGGAATGAGTCAGGCTGTCCAGTTCCTAATCCAGATTCTTCAAGCCAACACTGAAGTCCAGTGCAAGATAGATTCCCTCCATGCACTCTATAATCTTTCTACTGTGCCCTCCAACATTCCAAACCTCCTTTCATCTGGCATCATCAGTGGCCTACAATCGCTTCTTGTAGGCCAGGGTGATAGCATGTGGACAGAAAAATGTATAGCTGTTTTGATAAATTTGGCTGTTTCTCAAGCTGGAAGAGAGGAAATAATGTCGAGTCTTGGACTCATAACCGCATTGGCTTCGATACTGGATACTGGTGAACTCCTAGAGCAGGAGCAAGCTGCCTCTTGTCTCCTAATTTTGTGTAACAGGAGTGAGAAATGTTGTGAGATGGTACTGCAAGAAGGGGTTATACCTGCATTGGTGTCAATATCAGTGAATGGGACCTCAAGAGGAAGAGAAAAAGCTCAGAAACTCTTGATGCTCTTCAGAGAGCAGAGACAACGTGACCATTCACCAGATAAGACACATGAATGCCCACCTGATGAAACTAGTGATTTGTCCATGCCTCCTCATGAAACGAAACCTTTATGTAAATCAATATCTAGAAGAAAGGTGGGGAAAGCTTTTAGCTTTCTCTGGAAAACTAAGAGCTATTCTGTTTACCAATGTTAA 2151 0.4198 MMDVAEVEENLFAASDAKLHGEMCKGLSAIYCKIFSLFPSLEAARPRSKSGIQALCSLHVALEKAKNVLRHCSECSKLYLAITGDSVLLKFEKVKCALEDSLKQVEDIVPQSIGCQAATRLGITSSRVALTERRALKKLIERARAEEDKRKESIIAFLLHLMRKYSKLFRSEFSDDNDSQGSQPCSPTVQRPLEDGVPSGHSQAFDRQISKLSSFNFKPSNRKSGQMLLPPEELRCPISLQLMSDPVIIASGQTYERVCIEKWFRDGHNTCPKTQQKLSHLSLTPNYCVKGLVASWCEHNGVPIPEGPPESLDFNYWRLALSDSESTNSRSVNCVSSCKLKGVKVVPLEESGIAEQTGGNETESLSAQEEDNEQYSSFLKVLTEGNNWKSKGKVVERLRLLLRDDDEARILMGANGFVEVLLQFLQSAVHEGDVMAQESGAMALFNLAVNNNRNKEIMISAGILSLVEEMISNTSSHDCAAALYLNLSCLEEAKTVIGMSQAVQFLIQILQANTEVQCKIDSLHALYNLSTVPSNIPNLLSSGIISGLQSLLVGQGDSMWTEKCIAVLINLAVSQAGREEIMSSLGLITALASILDTGELLEQEQAASCLLILCNRSEKCCEMVLQEGVIPALVSISVNGTSRGREKAQKLLMLFREQRQRDHSPDKTHECPPDETSDLSMPPHETKPLCKSISRRKVGKAFSFLWKTKSYSVYQC 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3838g00019 716 CDD RING-Ubox_PUB 231 283 IPR045210 -
Gabi3838g00019 716 ProSiteProfiles U-box domain profile. 229 303 IPR003613 GO:0004842|GO:0016567
Gabi3838g00019 716 PANTHER U BOX DOMAIN-CONTAINING 24 659 - -
Gabi3838g00019 716 FunFam RING-type E3 ubiquitin transferase 229 303 - -
Gabi3838g00019 716 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 416 462 IPR000225 GO:0005515
Gabi3838g00019 716 SMART Ubox_2 233 296 IPR003613 GO:0004842|GO:0016567
Gabi3838g00019 716 SUPERFAMILY RING/U-box 225 305 - -
Gabi3838g00019 716 MobiDBLite consensus disorder prediction 659 688 - -
Gabi3838g00019 716 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 230 303 IPR013083 -
Gabi3838g00019 716 MobiDBLite consensus disorder prediction 174 202 - -
Gabi3838g00019 716 SUPERFAMILY ARM repeat 374 657 IPR016024 -
Gabi3838g00019 716 MobiDBLite consensus disorder prediction 659 674 - -
Gabi3838g00019 716 MobiDBLite consensus disorder prediction 175 189 - -
Gabi3838g00019 716 Pfam U-box domain 231 300 IPR003613 GO:0004842|GO:0016567
Gabi3838g00019 716 SMART arm_5 405 449 IPR000225 GO:0005515
Gabi3838g00019 716 SMART arm_5 451 489 IPR000225 GO:0005515
Gabi3838g00019 716 SMART arm_5 490 531 IPR000225 GO:0005515
Gabi3838g00019 716 Gene3D - 359 666 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3838g00019 Gabi-Chr3838 137253 142017 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3838g00019 2 715 U-box Gene Family AT1G24330 61.697 0.0 942
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3838g00019 - - gmx:100804344 1195.26