Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3838g00018 ATGCCGCAATCAGAAAAATCGCTCGGCATACCAGGAGATGGTAGATGTTTGTTTAGATCTGTGGCCTATGGTGCCTGCCTCAGAACAGGGGAACCATCTCCAAGTCTCAGCAGGCAAAAAGAACTCGCAGATGAGCTCAGAGCCAGAGTTGTAGACGAATTCATTAAAAGGAGGGAAGACACTGAGTGGTTTCTTGAGGGTGACTTTGACACCTATACGGTACAGATGCGAAAACCTCACATATGGGGAGGAGAGCCTGAACTTCTCATGTCCTCACATGTTTTACAGATGCCTATAACAGTGCTCATGCAGGATAACAATTCAAGTAACCTTAAAGTTATAGCTGAATACGGTCAGGAGTATGGTAAAGATAACCCAATTCGAGTCATCTTTCATGGTTATGGCCACTATGATGCATTGAAGAGTTCAACTGGTTATATGCAGTCTTAG 450 0.4422 MPQSEKSLGIPGDGRCLFRSVAYGACLRTGEPSPSLSRQKELADELRARVVDEFIKRREDTEWFLEGDFDTYTVQMRKPHIWGGEPELLMSSHVLQMPITVLMQDNNSSNLKVIAEYGQEYGKDNPIRVIFHGYGHYDALKSSTGYMQS 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3838g00018 149 PANTHER HIV-INDUCED PROTEIN-7-LIKE PROTEASE 10 142 - -
Gabi3838g00018 149 SUPERFAMILY Cysteine proteinases 9 141 IPR038765 -
Gabi3838g00018 149 FunFam OTU domain-containing protein 2 146 - -
Gabi3838g00018 149 Gene3D - 3 147 - -
Gabi3838g00018 149 Pfam OTU-like cysteine protease 11 137 IPR003323 -
Gabi3838g00018 149 CDD OTU_plant_OTU4-like 9 140 - -
Gabi3838g00018 149 ProSiteProfiles OTU domain profile. 5 143 IPR003323 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3838g00018 Gabi-Chr3838 124823 126940 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3838g00018 10 143 C2H2 Transcription Factor Family AT1G50670 27.407 4.42e-06 42.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3838g00018 K18342 - gmx:100792132 271.937