Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3838g00017 ATGCCGCAATCAGAAAAATCGCTCGGTAACAACCTTCCAATAATTCGCATACCAGGAGATGGTAGATGTTTGTTTAGATCTGTGGCCTATGGTGCCTGCCTCAGAACAGGGGAACCATCTCCAAGTCTCAGCAGGCAAAAAGAACTCGCAGATGAGCTCAGAGCCAGAGTTGTAGACGAATTCATTAAAAGGAGGGAAGACACTGAGTGGTTTCTTGAGGGTGACTTTGACACCTATACGGTACAGATGCGAAAACCTCACATATGGGGAGGAGAGCCTGAACTTCTCATGTCCTCACATGTTTTACAGATGCCTATAACAGTGCTCATGCAGGATAACAATTCAAGTAACCTTAAAGTTATAGCTGAATACGGTCAGGAGTATGGTAAAGATAACCCAATTCGAGTCATCTTTCATGGTTATGGCCACTATGATGCATTGAAGAGTTCAACTGGTTATATGCAGTCTTAG 471 0.4374 MPQSEKSLGNNLPIIRIPGDGRCLFRSVAYGACLRTGEPSPSLSRQKELADELRARVVDEFIKRREDTEWFLEGDFDTYTVQMRKPHIWGGEPELLMSSHVLQMPITVLMQDNNSSNLKVIAEYGQEYGKDNPIRVIFHGYGHYDALKSSTGYMQS 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3838g00017 156 Pfam OTU-like cysteine protease 18 144 IPR003323 -
Gabi3838g00017 156 SUPERFAMILY Cysteine proteinases 11 148 IPR038765 -
Gabi3838g00017 156 Gene3D - 2 154 - -
Gabi3838g00017 156 CDD OTU_plant_OTU4-like 11 147 - -
Gabi3838g00017 156 PANTHER HIV-INDUCED PROTEIN-7-LIKE PROTEASE 16 149 - -
Gabi3838g00017 156 FunFam OTU domain-containing protein 2 153 - -
Gabi3838g00017 156 ProSiteProfiles OTU domain profile. 12 150 IPR003323 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3838g00017 Gabi-Chr3838 124823 126944 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3838g00017 14 150 C2H2 Transcription Factor Family AT1G50670 27.857 5.63e-06 42.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3838g00017 K18342 - gmx:100792132 292.737