Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3838g00016 ATGGGGTTTGAGGGTTTGATTAGCAGCAACAGTAGTAACAGTGGGGGTGGGGGTGCAAGAGTTGTGGCTGATAGTTCTTCAAAGAACCACTTCATGCATAGTGTTTCCATTGTTGAGTCGCCTCTTTTTTCTCCACCCATTACCATATCAAAGCAAAATTTCTCTACCATGTTTTTGTCCACTCAAAGGAAAATGGAGGGTCATGATCAGATGGCTCTTATTGGAGAAAATTTTGAGAATGGTTTGATGGGGAGGATGAGGGATGATGAGAATGAAAGCAGGTCTGGAAGTGATAATTTTGAAGGTGGATCTGGTGATGATCAAGATGCTGGTGATAACACCCCACAGAGGAAGAAAAAATATCATAGACACACTCCTCAACAAATTCAGGAGCTTGAATCTTTCTTCAAGGATTGTCCTCATCCTGATGAGAAGCAAAGATCAGATCTTGGTAAGAAGCTTGGTTTGGAGAATAAGCAAATCAAGTTCTGGTTCCAGAATCGGCGAACCCAAATGAAGACACAACTGGAACGCCATGAGAACATGATTCTTAAGCAGGAAAATGACAAGCTCCGAGCTGAGAACACCATGATGAGGGAAGCTATTGAAAATCCAATATGTAACAATTGTGGTGGACATGCCATTCCTGGCCGAATTTCAATGTCTGGGATTCGACCACCAATGGGATTGATAGGAAACCGAGTCCAGATTGATCCATCTATGCTTGTTAATCTTGCAGCATCTGCTATGGATGAATTAATTGGGATGACTCAGATAGATAACTCTCTTTGGATTAAGAGTTCAGATGGAGGGAAGGAAGTACTGAACCATGAGGAGTATGCGAGGATGTCTTCTATCTATAATGGTACTAAACCCATTGGTTATGCAACTGAAGCTACAAGAGAAACTGGGCTAGTACTAATTAACAGTTTGGCCCTTGTGGACTCATTGATGGATGCGATTACATGGATTGATCATTCCCAGTATGATGAGAGTGTTATCCCCCAACTCTATCGCCGATTGGTTAGTTCAGGCATTGGATTTGGTGCTCAGAGATGGATTGCCACTCTCCAAAGGCAGTGTCAATGCTTGGCAATCCTCTCTTCCCCTTCCATCCGAGCTGAGAACCCTAAAGCCCTAGTAGGCCAACCCGGCATGAAAAGCTTACTGAAGCTCACGCAACGCATGACAGAATGCTTCTATTCTGGGATTTGTGCTTCGTCTACACGCAAGTGGGAAATCATTCCTCTTGCAACACTTGGTGATGACATAAAAGTGATGACCCGGAAAAATGTTTGGATGCCGGTGTCGAGGCAAAGGCTGTTTGACTTCCTGCGTGAGGCACGGACGAGAAGGCATTGGGACGACTTGGCCAGTGATGTTACAGTGAACGAGATTCACAGTATTGTTAAAGGGGAAGGACAAGGAAATTGCATTTCTATACTTCGCGCTAATAGTGGGGTTAGACACTGGTATTCCACTAGAGTCAGGAAAGACCTCCAACCTCTTTGA 1512 0.4411 MGFEGLISSNSSNSGGGGARVVADSSSKNHFMHSVSIVESPLFSPPITISKQNFSTMFLSTQRKMEGHDQMALIGENFENGLMGRMRDDENESRSGSDNFEGGSGDDQDAGDNTPQRKKKYHRHTPQQIQELESFFKDCPHPDEKQRSDLGKKLGLENKQIKFWFQNRRTQMKTQLERHENMILKQENDKLRAENTMMREAIENPICNNCGGHAIPGRISMSGIRPPMGLIGNRVQIDPSMLVNLAASAMDELIGMTQIDNSLWIKSSDGGKEVLNHEEYARMSSIYNGTKPIGYATEATRETGLVLINSLALVDSLMDAITWIDHSQYDESVIPQLYRRLVSSGIGFGAQRWIATLQRQCQCLAILSSPSIRAENPKALVGQPGMKSLLKLTQRMTECFYSGICASSTRKWEIIPLATLGDDIKVMTRKNVWMPVSRQRLFDFLREARTRRHWDDLASDVTVNEIHSIVKGEGQGNCISILRANSGVRHWYSTRVRKDLQPL 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3838g00016 503 Pfam Homeodomain 118 173 IPR001356 GO:0003677
Gabi3838g00016 503 MobiDBLite consensus disorder prediction 1 20 - -
Gabi3838g00016 503 Pfam START domain 321 363 IPR002913 GO:0008289
Gabi3838g00016 503 FunFam Homeobox-leucine zipper protein HDG1 104 191 - -
Gabi3838g00016 503 MobiDBLite consensus disorder prediction 1 22 - -
Gabi3838g00016 503 CDD homeodomain 118 175 IPR001356 GO:0003677
Gabi3838g00016 503 ProSiteProfiles 'Homeobox' domain profile. 115 175 IPR001356 GO:0003677
Gabi3838g00016 503 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 116 320 IPR042160 -
Gabi3838g00016 503 Gene3D - 105 191 - -
Gabi3838g00016 503 ProSiteProfiles START domain profile. 235 323 IPR002913 GO:0008289
Gabi3838g00016 503 SUPERFAMILY Homeodomain-like 103 175 IPR009057 -
Gabi3838g00016 503 SMART HOX_1 117 179 IPR001356 GO:0003677
Gabi3838g00016 503 ProSiteProfiles START domain profile. 324 366 IPR002913 GO:0008289
Gabi3838g00016 503 Coils Coil 169 204 - -
Gabi3838g00016 503 MobiDBLite consensus disorder prediction 83 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3838g00016 Gabi-Chr3838 104892 107898 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3838g00016 321 376 Homeobox Transcription Factor Family AT4G00730 60.714 4.60e-18 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gabi3838g00016 Homeodomain 4e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3838g00016 K09338 - gmx:100784656 306.605