Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3838g00013 ATGGCGGCTGGTGGACATGGAGGTTATAGCGAAAACGAGTTGAGGGAGCGTGAGTCCAATTTTGATGTTTCAAGACGTGGTGTTAGTAATAATTCTAGAGAAAAGTATGATAGGATTAGGAATGGTAGCCGCGATGTTGCGAGGGTTGGGAACAAGGATGCAAGAGATAGGATTAGACCGAGACAGAAAGATATTAGATTGAGAGAAGCTTCGAATGGCAGTTACCGGTCATCATCGAGTGGGAGTGACTCGGGCTCCGGCGGCAGTGGCGGGCTTGGGCCAAGACGATGTGGGTTTTCTGTTAAGACTATGGACAGAGAACCAGGTGAGCTTTCTAGTGAGAGTGGGTCTGATGATGCAATTGAATCAGAATCAGTGGTGAAATACTGTGAGGTTGCAAGGGGTGAAGAAAACGGGACTCAATCTCCACTAGACAGGAAAAGAAAATTTTCACCAATAGTGTGGGATAAGGATGATGAAGAAGTGAATGATTTATGCAAACATAGGGTAGCTACAACAGTGACTGCTCTTCCCCCTCCATCCCCAGTTTCTAGAGTAATCCGTCAGTCAGCTAATGTTCCTTACAATGGAGTTGAAATTCATCCTGTACAAAACAGAGAAGCTGAGAGTATTGAGTTGCCGACTGGTACTAATTCTTCATTGATGTCTGAGTCAATTAAAGATGCTGAATCTGAGTCTCTTGCAGGTTTGCATTCATTTTTGCCTGAGCAGAGGTTGGGTAATGAGCCGGAAGCTGAGCTATCAGAAGGTGAGGATTATGTTCCAACTCATAATATATTATCTTCAAGATGGGCAGCTGGAGATAACTCTCCCGTTGATGAAGGTGAAATCAATGATGTCAAGGAAATCCTTAAATCGAGGAGGAGGCTCTCTCCTGAGCTGGGTACGAGAGTAAGAACCAAGATGTTGAGACCAGAGGAATCTAAAATAGAAGGTTTTGAAGGGGTTAGATCTATATCATCTGAATCTGAAGAAAGAGGTAGCGGAGGGAGATCGTCCAGTGGAGATGATCAATCGGAGAAGGATGACTATATGGAGATTGATGGTCAAGGTTGCAACAGTGAAACTAGTAGTAATCACTCAGATACAGACTCTGAAGATGAAGATGATAGCCGGAAAACTCCAGAACCTCCGGCTCCGGCACAAAGAGTTGTCAACATGCTTCAGGGTTGTAGAAGTGTTGATGAATTTGAGAGACTGAACAAGATAGATGAAGGAACATATGGTGTTGTATATAGGGCCAAAGATAAGAAGACTGGGGAAATTGTGGCATTGAAGAAAGTGAAGATGGAGAAGGAAAAAGAAGGCTTTCCCCTGACTTCTCTTAGAGAAATAAACATTCTTCTTTCCTTTCACCACCCATCAGTAGTTGACGTTAAAGAAGTGGTGGTAGGGAGTAGCCTTGACAGTATTTTCATGGTAATGGAATACATGGAACATGATCTTAAAGGATTAATGGAGGCAATGAAGCAGCCATTTAGCCAGAGTGAAGTAAAATGCTTAATGCTCCAGCTTTTGGAAGGTGTGAAGTATCTTCATGACAACTGGGTTCTTCATAGGGATTTGAAGACGTCAAATCTGCTTCTGAATAATCGGGGTGAGTTAAAAATTTGTGATTTTGGATTGGCTCGGCAGTATGGGAGTCCATTGAAACCATATACACACCTTGTAGTTACTCTTTGGTACAGGGCTCCTGAACTTCTTCTGGGGACAAAACAGTATTCGACAGCCATTGACATGTGGTCTCTGGGTTGTATAATGGCTGAACTTTTGTCCAAGGAACCACTATTTAATGGGAAGGCTGAATTTGATCAACTTGACAAGATTTTCAGAATTCTTGGCACACCAAATGAATCTATTTGGCCTGGGTTCTCAGAATTACCTCGAGTCAAGGTCAATTTTGTCAAGCATCAGCTTCCAACTCTGGGTCGTTCTGGTATAATCTCCTGCGTAAAAAGTTTCCTGCAACATCATTCACTGGATCTCCAGTTCTTTCTGATTCTGGATTTGATTTGTTGA 2040 0.4284 MAAGGHGGYSENELRERESNFDVSRRGVSNNSREKYDRIRNGSRDVARVGNKDARDRIRPRQKDIRLREASNGSYRSSSSGSDSGSGGSGGLGPRRCGFSVKTMDREPGELSSESGSDDAIESESVVKYCEVARGEENGTQSPLDRKRKFSPIVWDKDDEEVNDLCKHRVATTVTALPPPSPVSRVIRQSANVPYNGVEIHPVQNREAESIELPTGTNSSLMSESIKDAESESLAGLHSFLPEQRLGNEPEAELSEGEDYVPTHNILSSRWAAGDNSPVDEGEINDVKEILKSRRRLSPELGTRVRTKMLRPEESKIEGFEGVRSISSESEERGSGGRSSSGDDQSEKDDYMEIDGQGCNSETSSNHSDTDSEDEDDSRKTPEPPAPAQRVVNMLQGCRSVDEFERLNKIDEGTYGVVYRAKDKKTGEIVALKKVKMEKEKEGFPLTSLREINILLSFHHPSVVDVKEVVVGSSLDSIFMVMEYMEHDLKGLMEAMKQPFSQSEVKCLMLQLLEGVKYLHDNWVLHRDLKTSNLLLNNRGELKICDFGLARQYGSPLKPYTHLVVTLWYRAPELLLGTKQYSTAIDMWSLGCIMAELLSKEPLFNGKAEFDQLDKIFRILGTPNESIWPGFSELPRVKVNFVKHQLPTLGRSGIISCVKSFLQHHSLDLQFFLILDLIC 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3838g00013 679 MobiDBLite consensus disorder prediction 1 123 - -
Gabi3838g00013 679 MobiDBLite consensus disorder prediction 10 70 - -
Gabi3838g00013 679 CDD STKc_CDC2L1 398 651 IPR045267 GO:0004674|GO:0005524|GO:0006468
Gabi3838g00013 679 MobiDBLite consensus disorder prediction 303 389 - -
Gabi3838g00013 679 SMART serkin_6 404 672 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3838g00013 679 PANTHER CELL DIVISION PROTEIN KINASE 402 638 - -
Gabi3838g00013 679 Gene3D Phosphorylase Kinase; domain 1 388 486 - -
Gabi3838g00013 679 MobiDBLite consensus disorder prediction 336 355 - -
Gabi3838g00013 679 MobiDBLite consensus disorder prediction 210 227 - -
Gabi3838g00013 679 MobiDBLite consensus disorder prediction 71 87 - -
Gabi3838g00013 679 ProSitePatterns Serine/Threonine protein kinases active-site signature. 524 536 IPR008271 GO:0004672|GO:0006468
Gabi3838g00013 679 Gene3D Transferase(Phosphotransferase) domain 1 487 667 - -
Gabi3838g00013 679 SUPERFAMILY Protein kinase-like (PK-like) 396 644 IPR011009 -
Gabi3838g00013 679 MobiDBLite consensus disorder prediction 206 229 - -
Gabi3838g00013 679 ProSiteProfiles Protein kinase domain profile. 404 679 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3838g00013 679 MobiDBLite consensus disorder prediction 303 328 - -
Gabi3838g00013 679 FunFam Mitogen-activated protein kinase 485 643 - -
Gabi3838g00013 679 FunFam cyclin-dependent kinase G-2 isoform X1 389 486 - -
Gabi3838g00013 679 Pfam Protein kinase domain 404 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3838g00013 Gabi-Chr3838 74496 83130 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3838g00013 395 679 Core Cell Cycle Gene Families AT5G10270 45.886 3.89e-86 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-PITSLRE Gabi3838g00013 Pkinase 2e-66 CL0016