Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3838g00012 ATGATTTCGTTCCTAGGTTTGCATTCATTTTTGCCTGAGCAGAGGTTGGGTAATGAGCCGGAAGCTGAGCTATCAGAAGGTGAAATCAATGATGTCAAGGAAATCCTTAAATCGAGGAGGAGGCTCTCTCCTGAGCTGGGTACGAGAGTAAGAACCAAGATGTTGAGACCAGAGGAATCTAAAATAGAAGGTTTTGAAGGGGTTAGATCTATATCATCTGAATCTGAAGAAAGAGGTAGCGGAGGGAGATCGTCCAGTGGAGATGATCAATCGGAGAAGGATGACTATATGGAGATTGATGGTCAAGGTTGCAACAGTGAAACTAGTAGTAATCACTCAGATACAGACTCTGAAGATGAAGATGATAGCCGGAAAACTCCAGAACCTCCGGCTCCGGCACAAAGAGTTGTCAACATGCTTCAGGGTTGTAGAAGTGTTGATGAATTTGAGAGACTGAACAAGATAGATGAAGGAACATATGGTGTTGTATATAGGGCCAAAGATAAGAAGACTGGGGAAATTGTGGCATTGAAGAAAGTGAAGATGGAGAAGGAAAAAGAAGGCTTTCCCCTGACTTCTCTTAGAGAAATAAACATTCTTCTTTCCTTTCACCACCCATCAGTAGTTGACGTTAAAGAAGTGGTGGTAGGGAGTAGCCTTGACAGTATTTTCATGGTAATGGAATACATGGAACATGATCTTAAAGGATTAATGGAGGCAATGAAGCAGCCATTTAGCCAGAGTGAAGTAAAATGCTTAATGCTCCAGCTTTTGGAAGGTGTGAAGTATCTTCATGACAACTGGGTTCTTCATAGGGATTTGAAGACGTCAAATCTGCTTCTGAATAATCGGGGTGAGTTAAAAATTTGTGATTTTGGATTGGCTCGGCAGTATGGGAGTCCATTGAAACCATATACACACCTTGTAGTTACTCTTTGGTACAGGGCTCCTGAACTTCTTCTGGGGACAAAACAGTATTCGACAGCCATTGACATGTGGTCTCTGGGTTGTATAATGGCTGAACTTTTGTCCAAGGAACCACTATTTAATGGGAAGGCTGAATTTGATCAACTTGACAAGATTTTCAGAATTCTTGGCACACCAAATGAATCTATTTGGCCTGGGTTCTCAGAATTACCTCGAGTCAAGGTCAATTTTGTCAAGCATCAGTATAATCTCCTGCGTAAAAAGTTTCCTGCAACATCATTCACTGGATCTCCAGTTCTTTCTGATTCTGGATTTGATTTGTTGAACAAGCTTCTTACTTATGATCCCAAAAAGCGGATCACAGCTGAAGCTGCTCTTAACCACGAGTGGTTTCGTGAAGTTCCCCTTCCTAAGTCTAAAGAATTCATGCCTACATTCCCTGCTCAACATGCTCAAGACAGGCGGATGCGGAGAATATTAAGGAGTCCGGATCCATTAAAGGAGCAGCGACGGAAGGAGTTACAGCAGGGTGAATCAGGGACTGGTGGTATTTTTGGTTAA 1488 0.4234 MISFLGLHSFLPEQRLGNEPEAELSEGEINDVKEILKSRRRLSPELGTRVRTKMLRPEESKIEGFEGVRSISSESEERGSGGRSSSGDDQSEKDDYMEIDGQGCNSETSSNHSDTDSEDEDDSRKTPEPPAPAQRVVNMLQGCRSVDEFERLNKIDEGTYGVVYRAKDKKTGEIVALKKVKMEKEKEGFPLTSLREINILLSFHHPSVVDVKEVVVGSSLDSIFMVMEYMEHDLKGLMEAMKQPFSQSEVKCLMLQLLEGVKYLHDNWVLHRDLKTSNLLLNNRGELKICDFGLARQYGSPLKPYTHLVVTLWYRAPELLLGTKQYSTAIDMWSLGCIMAELLSKEPLFNGKAEFDQLDKIFRILGTPNESIWPGFSELPRVKVNFVKHQYNLLRKKFPATSFTGSPVLSDSGFDLLNKLLTYDPKKRITAEAALNHEWFREVPLPKSKEFMPTFPAQHAQDRRMRRILRSPDPLKEQRRKELQQGESGTGGIFG 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3838g00012 495 CDD STKc_CDC2L1 143 440 IPR045267 GO:0004674|GO:0005524|GO:0006468
Gabi3838g00012 495 MobiDBLite consensus disorder prediction 456 495 - -
Gabi3838g00012 495 MobiDBLite consensus disorder prediction 81 100 - -
Gabi3838g00012 495 SMART serkin_6 149 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3838g00012 495 MobiDBLite consensus disorder prediction 48 73 - -
Gabi3838g00012 495 MobiDBLite consensus disorder prediction 460 484 - -
Gabi3838g00012 495 Pfam Protein kinase domain 149 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3838g00012 495 PANTHER CELL DIVISION PROTEIN KINASE 147 446 - -
Gabi3838g00012 495 MobiDBLite consensus disorder prediction 48 134 - -
Gabi3838g00012 495 FunFam cyclin-dependent kinase G-2 isoform X1 134 231 - -
Gabi3838g00012 495 ProSiteProfiles Protein kinase domain profile. 149 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3838g00012 495 ProSitePatterns Serine/Threonine protein kinases active-site signature. 269 281 IPR008271 GO:0004672|GO:0006468
Gabi3838g00012 495 SUPERFAMILY Protein kinase-like (PK-like) 141 446 IPR011009 -
Gabi3838g00012 495 FunFam Cyclin-dependent kinase G-2 232 471 - -
Gabi3838g00012 495 Gene3D Transferase(Phosphotransferase) domain 1 232 473 - -
Gabi3838g00012 495 Gene3D Phosphorylase Kinase; domain 1 133 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3838g00012 Gabi-Chr3838 74496 83754 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3838g00012 140 486 Core Cell Cycle Gene Families AT5G10270 45.067 2.44e-96 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-PITSLRE Gabi3838g00012 Pkinase 5.9e-76 CL0016