LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi3838g00011	ATGATTTCGTTCCTAGGTTTGCATTCATTTTTGCCTGAGCAGAGGTTGGGTAATGAGCCGGAAGCTGAGCTATCAGAAGGTGAGGATTATGTTCCAACTCATAATATATTATCTTCAAGATGGGCAGCTGGAGATAACTCTCCCGTTGATGAAGGTGAAATCAATGATGTCAAGGAAATCCTTAAATCGAGGAGGAGGCTCTCTCCTGAGCTGGGTACGAGAGTAAGAACCAAGATGTTGAGACCAGAGGAATCTAAAATAGAAGGTTTTGAAGGGGTTAGATCTATATCATCTGAATCTGAAGAAAGAGGTAGCGGAGGGAGATCGTCCAGTGGAGATGATCAATCGGAGAAGGATGACTATATGGAGATTGATGGTCAAGGTTGCAACAGTGAAACTAGTAGTAATCACTCAGATACAGACTCTGAAGATGAAGATGATAGCCGGAAAACTCCAGAACCTCCGGCTCCGGCACAAAGAGTTGTCAACATGCTTCAGGGTTGTAGAAGTGTTGATGAATTTGAGAGACTGAACAAGATAGATGAAGGAACATATGGTGTTGTATATAGGGCCAAAGATAAGAAGACTGGGGAAATTGTGGCATTGAAGAAAGTGAAGATGGAGAAGGAAAAAGAAGGCTTTCCCCTGACTTCTCTTAGAGAAATAAACATTCTTCTTTCCTTTCACCACCCATCAGTAGTTGACGTTAAAGAAGTGGTGGTAGGGAGTAGCCTTGACAGTATTTTCATGGTAATGGAATACATGGAACATGATCTTAAAGGATTAATGGAGGCAATGAAGCAGCCATTTAGCCAGAGTGAAGTAAAATGCTTAATGCTCCAGCTTTTGGAAGGTGTGAAGTATCTTCATGACAACTGGGTTCTTCATAGGGATTTGAAGACGTCAAATCTGCTTCTGAATAATCGGGGTGAGTTAAAAATTTGTGATTTTGGATTGGCTCGGCAGTATGGGAGTCCATTGAAACCATATACACACCTTGTAGTTACTCTTTGGTACAGGGCTCCTGAACTTCTTCTGGGGACAAAACAGTATTCGACAGCCATTGACATGTGGTCTCTGGGTTGTATAATGGCTGAACTTTTGTCCAAGGAACCACTATTTAATGGGAAGGCTGAATTTGATCAACTTGACAAGATTTTCAGAATTCTTGGCACACCAAATGAATCTATTTGGCCTGGGTTCTCAGAATTACCTCGAGTCAAGGTCAATTTTGTCAAGCATCAGTATAATCTCCTGCGTAAAAAGTTTCCTGCAACATCATTCACTGGATCTCCAGTTCTTTCTGATTCTGGATTTGATTTGTTGAACAAGCTTCTTACTTATGATCCCAAAAAGCGGATCACAGCTGAAGCTGCTCTTAACCACGAGTGGTTTCGTGAAGTTCCCCTTCCTAAGTCTAAAGAATTCATGCCTACATTCCCTGCTCAACATGCTCAAGACAGGCGGATGCGGAGAATATTAAGGAGTCCGGATCCATTAAAGGAGCAGCGACGGAAGGAGTTACAGCAGGGTGAATCAGGGACTGGTGGTATTTTTGGTTAA	1563	0.4223	MISFLGLHSFLPEQRLGNEPEAELSEGEDYVPTHNILSSRWAAGDNSPVDEGEINDVKEILKSRRRLSPELGTRVRTKMLRPEESKIEGFEGVRSISSESEERGSGGRSSSGDDQSEKDDYMEIDGQGCNSETSSNHSDTDSEDEDDSRKTPEPPAPAQRVVNMLQGCRSVDEFERLNKIDEGTYGVVYRAKDKKTGEIVALKKVKMEKEKEGFPLTSLREINILLSFHHPSVVDVKEVVVGSSLDSIFMVMEYMEHDLKGLMEAMKQPFSQSEVKCLMLQLLEGVKYLHDNWVLHRDLKTSNLLLNNRGELKICDFGLARQYGSPLKPYTHLVVTLWYRAPELLLGTKQYSTAIDMWSLGCIMAELLSKEPLFNGKAEFDQLDKIFRILGTPNESIWPGFSELPRVKVNFVKHQYNLLRKKFPATSFTGSPVLSDSGFDLLNKLLTYDPKKRITAEAALNHEWFREVPLPKSKEFMPTFPAQHAQDRRMRRILRSPDPLKEQRRKELQQGESGTGGIFG	520

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi3838g00011	520	MobiDBLite	consensus disorder prediction	485	509	-	-
	Gabi3838g00011	520	PANTHER	CELL DIVISION PROTEIN KINASE	172	471	-	-
	Gabi3838g00011	520	CDD	STKc_CDC2L1	168	465	IPR045267	GO:0004674\|GO:0005524\|GO:0006468
	Gabi3838g00011	520	FunFam	cyclin-dependent kinase G-2 isoform X1	159	256	-	-
	Gabi3838g00011	520	SUPERFAMILY	Protein kinase-like (PK-like)	166	471	IPR011009	-
	Gabi3838g00011	520	Gene3D	Transferase(Phosphotransferase) domain 1	257	498	-	-
	Gabi3838g00011	520	Pfam	Protein kinase domain	174	465	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi3838g00011	520	ProSiteProfiles	Protein kinase domain profile.	174	465	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi3838g00011	520	MobiDBLite	consensus disorder prediction	73	160	-	-
	Gabi3838g00011	520	MobiDBLite	consensus disorder prediction	481	520	-	-
	Gabi3838g00011	520	SMART	serkin_6	174	465	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi3838g00011	520	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	294	306	IPR008271	GO:0004672\|GO:0006468
	Gabi3838g00011	520	MobiDBLite	consensus disorder prediction	106	125	-	-
	Gabi3838g00011	520	FunFam	Cyclin-dependent kinase G-2	257	496	-	-
	Gabi3838g00011	520	MobiDBLite	consensus disorder prediction	73	98	-	-
	Gabi3838g00011	520	Gene3D	Phosphorylase Kinase; domain 1	158	256	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi3838g00011	Gabi-Chr3838	74496	83754	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi3838g00011	165	511	Core Cell Cycle Gene Families	AT5G10270	45.067	5.12e-96	298

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-PITSLRE	Gabi3838g00011		Pkinase	6.8e-76	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi3838g00011	K08818		-	gmx:100792524	863.988