Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3838g00009 ATGGCGGCTGGTGGACATGGAGGTTATAGCGAAAACGAGTTGAGGGAGCGTGAGTCCAATTTTGATGTTTCAAGACGTGGTGTTAGTAATAATTCTAGAGAAAAGTATGATAGGATTAGGAATGGTAGCCGCGATGTTGCGAGGGTTGGGAACAAGGATGCAAGAGATAGGATTAGACCGAGACAGAAAGATATTAGATTGAGAGAAGCTTCGAATGGCAGTTACCGGTCATCATCGAGTGGGAGTGACTCGGGCTCCGGCGGCAGTGGCGGGCTTGGGCCAAGACGATGTGGGTTTTCTGTTAAGACTATGGACAGAGAACCAGGTGAGCTTTCTAGTGAGAGTGGGTCTGATGATGCAATTGAATCAGAATCAGTGGTGAAATACTGTGAGGTTGCAAGGGGTGAAGAAAACGGGACTCAATCTCCACTAGACAGGAAAAGAAAATTTTCACCAATAGTGTGGGATAAGGATGATGAAGAAGTGAATGATTTATGCAAACATAGGGTAGCTACAACAGTGACTGCTCTTCCCCCTCCATCCCCAGTTTCTAGAGTAATCCGTCAGTCAGCTAATGTTCCTTACAATGGAGTTGAAATTCATCCTGTACAAAACAGAGAAGCTGAGAGTATTGAGTTGCCGACTGGTACTAATTCTTCATTGATGTCTGAGTCAATTAAAGATGCTGAATCTGAGTCTCTTGCAGGTTTGCATTCATTTTTGCCTGAGCAGAGGTTGGGTAATGAGCCGGAAGCTGAGCTATCAGAAGGTGAAATCAATGATGTCAAGGAAATCCTTAAATCGAGGAGGAGGCTCTCTCCTGAGCTGGGTACGAGAGTAAGAACCAAGATGTTGAGACCAGAGGAATCTAAAATAGAAGGTTTTGAAGGGGTTAGATCTATATCATCTGAATCTGAAGAAAGAGGTAGCGGAGGGAGATCGTCCAGTGGAGATGATCAATCGGAGAAGGATGACTATATGGAGATTGATGGTCAAGGTTGCAACAGTGAAACTAGTAGTAATCACTCAGATACAGACTCTGAAGATGAAGATGATAGCCGGAAAACTCCAGAACCTCCGGCTCCGGCACAAAGAGTTGTCAACATGCTTCAGGGTTGTAGAAGTGTTGATGAATTTGAGAGACTGAACAAGATAGATGAAGGAACATATGGTGTTGTATATAGGGCCAAAGATAAGAAGACTGGGGAAATTGTGGCATTGAAGAAAGTGAAGATGGAGAAGGAAAAAGAAGGCTTTCCCCTGACTTCTCTTAGAGAAATAAACATTCTTCTTTCCTTTCACCACCCATCAGTAGTTGACGTTAAAGAAGTGGTGGTAGGGAGTAGCCTTGACAGTATTTTCATGGTAATGGAATACATGGAACATGATCTTAAAGGATTAATGGAGGCAATGAAGCAGCCATTTAGCCAGAGTGAAGTAAAATGCTTAATGCTCCAGCTTTTGGAAGGTGTGAAGTATCTTCATGACAACTGGGTTCTTCATAGGGATTTGAAGACGTCAAATCTGCTTCTGAATAATCGGGGTGAGTTAAAAATTTGTGATTTTGGATTGGCTCGGCAGTATGGGAGTCCATTGAAACCATATACACACCTTGTAGTTACTCTTTGGTACAGGGCTCCTGAACTTCTTCTGGGGACAAAACAGTATTCGACAGCCATTGACATGTGGTCTCTGGGTTGTATAATGGCTGAACTTTTGTCCAAGGAACCACTATTTAATGGGAAGGCTGAATTTGATCAACTTGACAAGATTTTCAGAATTCTTGGCACACCAAATGAATCTATTTGGCCTGGGTTCTCAGAATTACCTCGAGTCAAGGTCAATTTTGTCAAGCATCAGTATAATCTCCTGCGTAAAAAGTTTCCTGCAACATCATTCACTGGATCTCCAGTTCTTTCTGATTCTGGATTTGATTTGTTGAACAAGCTTCTTACTTATGATCCCAAAAAGCGGATCACAGCTGAAGCTGCTCTTAACCACGAGTGGTTTCGTGAAGTTCCCCTTCCTAAGTCTAAAGAATTCATGCCTACATTCCCTGCTCAACATGCTCAAGACAGGCGGATGCGGAGAATATTAAGGAGTCCGGATCCATTAAAGGAGCAGCGACGGAAGGAGTTACAGCAGGGTGAATCAGGGACTGGTGGTATTTTTGGTTAA 2178 0.432 MAAGGHGGYSENELRERESNFDVSRRGVSNNSREKYDRIRNGSRDVARVGNKDARDRIRPRQKDIRLREASNGSYRSSSSGSDSGSGGSGGLGPRRCGFSVKTMDREPGELSSESGSDDAIESESVVKYCEVARGEENGTQSPLDRKRKFSPIVWDKDDEEVNDLCKHRVATTVTALPPPSPVSRVIRQSANVPYNGVEIHPVQNREAESIELPTGTNSSLMSESIKDAESESLAGLHSFLPEQRLGNEPEAELSEGEINDVKEILKSRRRLSPELGTRVRTKMLRPEESKIEGFEGVRSISSESEERGSGGRSSSGDDQSEKDDYMEIDGQGCNSETSSNHSDTDSEDEDDSRKTPEPPAPAQRVVNMLQGCRSVDEFERLNKIDEGTYGVVYRAKDKKTGEIVALKKVKMEKEKEGFPLTSLREINILLSFHHPSVVDVKEVVVGSSLDSIFMVMEYMEHDLKGLMEAMKQPFSQSEVKCLMLQLLEGVKYLHDNWVLHRDLKTSNLLLNNRGELKICDFGLARQYGSPLKPYTHLVVTLWYRAPELLLGTKQYSTAIDMWSLGCIMAELLSKEPLFNGKAEFDQLDKIFRILGTPNESIWPGFSELPRVKVNFVKHQYNLLRKKFPATSFTGSPVLSDSGFDLLNKLLTYDPKKRITAEAALNHEWFREVPLPKSKEFMPTFPAQHAQDRRMRRILRSPDPLKEQRRKELQQGESGTGGIFG 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3838g00009 725 MobiDBLite consensus disorder prediction 690 714 - -
Gabi3838g00009 725 MobiDBLite consensus disorder prediction 1 123 - -
Gabi3838g00009 725 PANTHER CELL DIVISION PROTEIN KINASE 377 676 - -
Gabi3838g00009 725 MobiDBLite consensus disorder prediction 10 70 - -
Gabi3838g00009 725 MobiDBLite consensus disorder prediction 206 263 - -
Gabi3838g00009 725 FunFam cyclin-dependent kinase G-2 isoform X1 364 461 - -
Gabi3838g00009 725 SUPERFAMILY Protein kinase-like (PK-like) 371 676 IPR011009 -
Gabi3838g00009 725 MobiDBLite consensus disorder prediction 686 725 - -
Gabi3838g00009 725 MobiDBLite consensus disorder prediction 278 364 - -
Gabi3838g00009 725 SMART serkin_6 379 670 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3838g00009 725 Pfam Protein kinase domain 379 670 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3838g00009 725 ProSiteProfiles Protein kinase domain profile. 379 670 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3838g00009 725 MobiDBLite consensus disorder prediction 249 263 - -
Gabi3838g00009 725 MobiDBLite consensus disorder prediction 210 227 - -
Gabi3838g00009 725 Gene3D Transferase(Phosphotransferase) domain 1 462 702 - -
Gabi3838g00009 725 MobiDBLite consensus disorder prediction 71 87 - -
Gabi3838g00009 725 Gene3D Phosphorylase Kinase; domain 1 363 461 - -
Gabi3838g00009 725 MobiDBLite consensus disorder prediction 311 330 - -
Gabi3838g00009 725 FunFam Cyclin-dependent kinase G-2 462 701 - -
Gabi3838g00009 725 CDD STKc_CDC2L1 373 670 IPR045267 GO:0004674|GO:0005524|GO:0006468
Gabi3838g00009 725 MobiDBLite consensus disorder prediction 278 303 - -
Gabi3838g00009 725 ProSitePatterns Serine/Threonine protein kinases active-site signature. 499 511 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3838g00009 Gabi-Chr3838 74496 83755 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3838g00009 370 716 Core Cell Cycle Gene Families AT5G10270 45.067 1.26e-94 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-PITSLRE Gabi3838g00009 Pkinase 1.5e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3838g00009 K08818 - gmx:100793729 1061.21