Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3837g00067 ATGCATGGGCTTCGAGGTGAGGAGAGAAAAAATAGGACTCGGCACATGTGGAAATCCACCACGCGTGTTCACCCTTTTGTAAGCGCTGATGTTTCTTCTTCTTCGTCGTCATCGTCAGTTAATTCCTTCTATAAGGATGGTCGCAAAATTAGTGCTGGTGACTGTGCTCTATTCAAACCACCTAAAGATTGCCCACCTTTTATCGGAATAATTCGTTGTGTGACAGTTGTTAAAGAGAAAAAATTAAAGTTAGGTGTAAATTGGCTTTATCGACCCATTGAAGTAAGACTTGGCAAAGGTGTGCCGTTGGAGACTGCTCCAAACGAAATTTTCTACTCCTTTCATAAGGATGAGATACCTGCTGCATTGCTGCTTCATCCTTGTAAAGTTTCATTTCTTCCTAAAGGTGTTGAGCTTCCATCAGGGATTTCCTCATTTGTATGCAGGAGGGTTTATGATATTGCGAACAAGTGTTTATGTTGGCTAAGTGATCAAGATTATATTAATGATTGCCAAGAAGAAGTAGATAAGCTATTATACAGGACTCGTGTAGAAATGCATGCAACAGTGCAGCCAGGCGGTCAATCTCCTAAGCCAGCGAGTAGTCCAACATCAACATCACAGTTAAAATCTGGTTCAGATAGCATGCTGAACAGTGTTTCTTCCTTTCCTTCTCAAGTTAAGGGTAGGAAAAGGGAGAGGGTAGATCATGGGCCAGAGTCTGTGAAGCGAGAACGTTCAACAAAACATGATGACAGAGATTCTGGCCAGTTTGGGCAGGATAGCATTTTAAAGACAGAGATTGCCAAAGTTACGGAAAAGGGACGGCTTGTTGATACTGAAGGGGTTGAGAAGTTGGTGCAGCTGATGGTTCCTGATAGAAATGAGAAAAAGATTGATTTAGCTAGCCGGTCAATGCTTGCAGCTGTTATTGTAGCAACAGATAAATTTGACTGCCTTAATCGGTTTGTGCAGCTGAGGGGCTTACCTGTATTTGATGAATGGCTCCAAGAGGCTCATAAAGGGAAGATTGGTGATGGTATTGGGTCTAGGGATCGTGATAAATTTGTTGATGAATTTCTATTGGTATTACTCCGGGCACTCGATAAGCTTCCAGTAAATCTTCAGGCTCTACAAGCATGTAACATTGGTAAATCTGTGAATCATTTACGAAGTCATAAAAACTCTGAAATTCAGAAGAAAGCAAGGGGTTTAGTTGACACATGGAAGAAACGTGTTGAAGCTGAAATGATTATAAATGATGCAAAGTCTGGTTCAGTTAAGACTGTCCCCTGGCCTGCCAGACAATGCCTTCCTGAAGTTCCTCATGGTGGGAATAGACTTTCAGGTGGGTCATCTGATGTTGCCCTGAAGAGCTCAGTTACACAGATTTCTGCATCCAAAAAGGCCTCTCTGAAGATTGTCCAGGGTGAGAATACTACTAGATCTTTGTCAACATCTGCATCTCCAAGGTCTGTGAAGTCAGTTCCCTCACCTGTTTCTGCAACTATGAACTTAAAGGAAGTACAGTCAGTTCCCTCACCTGTTTCTGCAACTATGAACTTAAAGGAAGTACAGTCCCGTGTTGCAGCTGTTAGTGGCTCCTCTGATCTTCCTGTGACAAATGCAAGGGATGAGAAAAGCTGTAGTTCTAGTCAATCGCATAACAGTCAATCTTATTCCAGTGACCATGCTAAAGCTGGGAGTCTTTCAGGTAAGGAGGATGGCAGAAGCTCTACTGCAATGAGTGTGAATAAAGTATCAGGTGGCTCTACACGCCACCGAAAACCTATGAATGGATTTCCAGGGTTGGCTCCATCTGGAGGGCAAAGGGAAACTGGGTCAAGCAGAAATTCTTCCTTGAACAAAAATTTAACTTCAGAGAAAATATCTCAATCTGGATTGATGGAAAAGGCACTTGATGGAACTTCTCTTGAGGGGCATAATCCCAAGCTGATTGTAAAGATCCCAAACCGAGGTCGAAGTCCAGCAAAAAGTGCCAGTGCAGGTTGTTTTGATGACCTTTCAATCATGACCAGTCGAGCTTCATCTCCTGTCCTTTCAGAGAAGCATGATAAGTTTGATCGCTGTTCAAAGGAAAAGAGTGATTTTTATCGAGCTAATATTGGTGCAGATATAAAAACAGAATCCTGGCAGAGTAACGATTTCAAAGATATATTGACTGGGTCTGATGAGGGTGATGCATCATCAGCGGCCATTACTGATGAAGAACACTGTAGGACTGTTGGTGTTTGTAAGAAAATATTAGATGTATCAAAGGTTGCTTCCTCCTCATCTGGGAATGAAAGTAAAGCCAGGAATTTGCAGGATGCTTCTTACAGCTCCATAAATGCTCTAATTGAAGGTGTTAAATACTCTGAAGCTGACGATGTTGGAATGAATCTTCTTGCTAGTGTGGCTGCTGGAGAGATTTCCAAATCTGAATTGGGAATGCCAGCTGAATCCCCTGAAAAAAACATCACTACAGTTGAACAGTCATGCACAGCTGATGCCATGGTCAAGTCTTCTGAAGAATGTCTTGTTAAGGATGAGTGTTACTCAAATGATGGTGAGCATAAGAAGCAAAGTTCCTTATCTGGTGATTTAGGGACCAAAGATGATAATGATTTTGGTTTTCTGGCATCTGGAGGGAAAGCTGCAGGAGAACATAATATAGATATTAATTCATCTAGTATGGATTTGCAGGTTACTGAAACTTGCTCTGAAAGTAAAGGAAAATTAACTGAGAAACCAGCTGATACTTCTTTTTCTGGCTTTCCCAAAAGCACCATTCAGGAAGCTAGAGATAGTGACTCTAGCATGTTGCTCAAGGAAAAGAAGGTTCTTTTGGGAGTGAATGCAGTTGGAAATCTTGATGTTAAGGTCAGTGATGTTGCAGGAGAAATTAAGGCAGAAGCAATTGAAAAATCATCACAGACCCCTGAAGAAGTTGATGTCAAGTGTGATAACTGTATTACTGAGGGATTAAGCAGTGTAGAGACAACTCAGAAGCCTCCTGCCATTCTTACACAGTTTGACTCAGTAAAAGAAACAGATGTAAATTTACTCCATGCATCTAGTTATAGAGTTGATAAGGTTCCTGAAGACCTAAATGAAAGGGGATCTGAAAAAAATGATATGGCTGCTCAGGATCAGGCTAGTCCGTCTAAAAAGCAAAGAAATGAGTCAGAAAGTGATGCTGTTAAAGTGCCTGAGAATAGAGGTTTATGTTCAGGTGTGACTGGTCTAGCTGCTGAGTACGTGGAAGTGAATTCAGGAATGAAAGAGGTTTTTGATCAAGATGCTGGACAAACTCCGTACACAGCTTCACCTGGCTTTCCTTCACTAGAAATGGATCAGTGTTTGGGTCCTAAAGGTTCAAAATTGGTTGCCGTTGAAGCAGAGGAATGCACCTCTACCACTAGAGATGCTTCTTCTATGTCTGCTGCTGATGTCTCAGATGTGGATGCAAAAGTTGAATTTGATTTAAATGAAGGGTTCAATACAGATGAAGGGAAATGTGGTGACTTCAACAGCATTGACATGCCTGGATGTGCACCTGCTGTAAGGTTGGTCAGTCCTGTTCCATTTTCTGCTTCATCTATGTCTGTTGGTATTCTCTCAATCACAGTGGCTGCTGCTGCAAAGGGTCCCTTTGGGCCACATGAAGATTTATTGAAAAGTAAAGGGGAGCTTGGTTGGAAGGGATCAGCCGCCACTAGCGCATTCCGGCCAGCTGAGCCCAGGAAAGTTATGGAAAAGCCTCTTGGTATACCTACCACCCCTATCCCTAATGCTGCAGGTAGAAGGCAGAGTTGGGCACAGTTGGATATTGACTTGAATATGCCTGATGAAAGAACACTTGATCATGTTTCTTCTCAAAACTATGATTGTCAGACAGATTGTGGAACTCGTGCAGCCAATGGTCATGATCCCAATAAATCAACGGCCTCACCTGTTCCTTGCTTTGGAGGACTTGGTCTTGACTTGAACCTAGTGGATGAGGCTTCTGATGCGGGCAATTGCACCATGAGCAGGAGTCATAAAATGGATATGCCACTCCTGCAGGTGAAGTCATCAGCCAGTGGTCCTCCAAATAGAGAGATGAGTGTCTGCAGGGATTTTGATCTGAACAATGGACCCGCTGTTGATGAAGTCACCACCGAACCATCGATGTCTGCTCAGCTTGCCAGGAGCAGTGTGCCATGTCAACCACCTGTTTCTGGACTTAGGATGAGTAATCCAGAACTAGGGAACTTCTCATCATGGTTTCCTTCCACTGGGAACACGTATTCAGCTGTAACGATATCTTCAATTATGCCTGATAGAGGGGATAAGTCCTTTTCAATTGGTGCCCCTAATGGACCGCAAAGGATGTTGGGTCCTGCAGCCGGTGGCAACGTATTTGGAACTGATGTTTACAGGGGGGCAGTTTTATCATCTCCTGCAGTGCCATATCCATCTGCACCATTCCAATATCCCGTCTTCCCTTTTAATTCTAGCTTTCCTCTTCCAGCAGCATCATTTTCTGGTGCATCAACTACTTACGTAGATTCAACTTCAGGAGGGAGGTTTTGCTTCCCTGCAGTAAATTCACAGCTAATAGGGCCTGCCAGTACCATTTCATCCCATTACCCCAGTAGTAGTAGTGCTGAGAACAGTAGGAAATGGGCAAGGCAGGATATAGATCTTAATGCTGGACCTGGCAGTTCAGAATTTGAGGGGAGAGATGATAGTTCACCTCTTGTACCACGGCAGCTTTCTGTTGCCAGTTCTCAGGGCCCTGCTGAAGAGCAAGCAAGGATGTTCCAGTTGGGTGGTGGTGTTCTTAAGAGGAAGGAACCTGATGGGGGGTGGGATCGCTACAAGCAATCATCATGGCAATACCAAAATTTGTAA 4899 0.4334 MHGLRGEERKNRTRHMWKSTTRVHPFVSADVSSSSSSSSVNSFYKDGRKISAGDCALFKPPKDCPPFIGIIRCVTVVKEKKLKLGVNWLYRPIEVRLGKGVPLETAPNEIFYSFHKDEIPAALLLHPCKVSFLPKGVELPSGISSFVCRRVYDIANKCLCWLSDQDYINDCQEEVDKLLYRTRVEMHATVQPGGQSPKPASSPTSTSQLKSGSDSMLNSVSSFPSQVKGRKRERVDHGPESVKRERSTKHDDRDSGQFGQDSILKTEIAKVTEKGRLVDTEGVEKLVQLMVPDRNEKKIDLASRSMLAAVIVATDKFDCLNRFVQLRGLPVFDEWLQEAHKGKIGDGIGSRDRDKFVDEFLLVLLRALDKLPVNLQALQACNIGKSVNHLRSHKNSEIQKKARGLVDTWKKRVEAEMIINDAKSGSVKTVPWPARQCLPEVPHGGNRLSGGSSDVALKSSVTQISASKKASLKIVQGENTTRSLSTSASPRSVKSVPSPVSATMNLKEVQSVPSPVSATMNLKEVQSRVAAVSGSSDLPVTNARDEKSCSSSQSHNSQSYSSDHAKAGSLSGKEDGRSSTAMSVNKVSGGSTRHRKPMNGFPGLAPSGGQRETGSSRNSSLNKNLTSEKISQSGLMEKALDGTSLEGHNPKLIVKIPNRGRSPAKSASAGCFDDLSIMTSRASSPVLSEKHDKFDRCSKEKSDFYRANIGADIKTESWQSNDFKDILTGSDEGDASSAAITDEEHCRTVGVCKKILDVSKVASSSSGNESKARNLQDASYSSINALIEGVKYSEADDVGMNLLASVAAGEISKSELGMPAESPEKNITTVEQSCTADAMVKSSEECLVKDECYSNDGEHKKQSSLSGDLGTKDDNDFGFLASGGKAAGEHNIDINSSSMDLQVTETCSESKGKLTEKPADTSFSGFPKSTIQEARDSDSSMLLKEKKVLLGVNAVGNLDVKVSDVAGEIKAEAIEKSSQTPEEVDVKCDNCITEGLSSVETTQKPPAILTQFDSVKETDVNLLHASSYRVDKVPEDLNERGSEKNDMAAQDQASPSKKQRNESESDAVKVPENRGLCSGVTGLAAEYVEVNSGMKEVFDQDAGQTPYTASPGFPSLEMDQCLGPKGSKLVAVEAEECTSTTRDASSMSAADVSDVDAKVEFDLNEGFNTDEGKCGDFNSIDMPGCAPAVRLVSPVPFSASSMSVGILSITVAAAAKGPFGPHEDLLKSKGELGWKGSAATSAFRPAEPRKVMEKPLGIPTTPIPNAAGRRQSWAQLDIDLNMPDERTLDHVSSQNYDCQTDCGTRAANGHDPNKSTASPVPCFGGLGLDLNLVDEASDAGNCTMSRSHKMDMPLLQVKSSASGPPNREMSVCRDFDLNNGPAVDEVTTEPSMSAQLARSSVPCQPPVSGLRMSNPELGNFSSWFPSTGNTYSAVTISSIMPDRGDKSFSIGAPNGPQRMLGPAAGGNVFGTDVYRGAVLSSPAVPYPSAPFQYPVFPFNSSFPLPAASFSGASTTYVDSTSGGRFCFPAVNSQLIGPASTISSHYPSSSSAENSRKWARQDIDLNAGPGSSEFEGRDDSSPLVPRQLSVASSQGPAEEQARMFQLGGGVLKRKEPDGGWDRYKQSSWQYQNL 1632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3837g00067 1632 ProSiteProfiles BAH domain profile. 48 163 IPR001025 GO:0003682
Gabi3837g00067 1632 MobiDBLite consensus disorder prediction 910 931 - -
Gabi3837g00067 1632 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 318 424 IPR035441 -
Gabi3837g00067 1632 MobiDBLite consensus disorder prediction 478 515 - -
Gabi3837g00067 1632 ProSiteProfiles TFIIS N-terminal domain profile. 339 416 IPR017923 -
Gabi3837g00067 1632 SMART BAH_4 48 163 IPR001025 GO:0003682
Gabi3837g00067 1632 Gene3D - 29 274 IPR043151 -
Gabi3837g00067 1632 MobiDBLite consensus disorder prediction 1584 1598 - -
Gabi3837g00067 1632 MobiDBLite consensus disorder prediction 530 630 - -
Gabi3837g00067 1632 MobiDBLite consensus disorder prediction 530 566 - -
Gabi3837g00067 1632 Pfam TFIIS helical bundle-like domain 364 413 IPR017923 -
Gabi3837g00067 1632 MobiDBLite consensus disorder prediction 194 226 - -
Gabi3837g00067 1632 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 1628 - -
Gabi3837g00067 1632 MobiDBLite consensus disorder prediction 1562 1632 - -
Gabi3837g00067 1632 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 281 417 IPR035441 -
Gabi3837g00067 1632 MobiDBLite consensus disorder prediction 227 258 - -
Gabi3837g00067 1632 CDD TFIIS_I 338 414 - -
Gabi3837g00067 1632 MobiDBLite consensus disorder prediction 609 630 - -
Gabi3837g00067 1632 MobiDBLite consensus disorder prediction 573 592 - -
Gabi3837g00067 1632 SMART TFS2_5 336 415 IPR003617 GO:0005634
Gabi3837g00067 1632 MobiDBLite consensus disorder prediction 1033 1073 - -
Gabi3837g00067 1632 MobiDBLite consensus disorder prediction 188 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3837g00067 Gabi-Chr3837 542077 549057 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Gabi3837g00067 Med26 1.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3837g00067 - - gmx:100788512 2087