Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3837g00054 ATGGTGGGTGTAAACCCCATATGGGGACTTTTCATTGTCATATTTTTGTTCTTTCCAATGACATATTCAGAGGATGAAGTGGTTAAGCAGGCCCTAGTCAGATTCATGGACAAACTTGCACAAGGGAATCCACAAAGGGATGCCAAGTACTTGAGTTGGAACCTCTCTTCAGATCCCTGCAATGGAAATTGGTATGGTGTGAGCTGCTTAGAGGGGAATGTGAATACTATAGTTGTTGATGATTCCAGCTTAAGAGGGACTTTAGATGCTAGTTCTCTTTGCATGGCAAAGTCTCTTCAAAGCTTAAGCCTGAAGAAAAACAATTTGCATGGATTGATACCTGAGGATATAGGAACATGCAAGTCCTTGAATCATTTGTATTTAAGTGAGAACAACTTCTCTGGTGATCTTCCTATTTCTCTTGCAGAACTAGGCAATTTGGAGAGGCTTAATATTGCAAGCAACAACTTCTCTGGAGAGCTTTATAATGTGATTCATGTTTCAGGGTTGATATCCTTTCTTGCTGAAAACAACAAATTTACGGGGGAAATTCCTGATTTTAACTTCTCCAAACTTTTGGAGTTTAATGTCTCCAACAACAATTTAGAGGGTCCACTTCCTGATTTTAGAGGGGGATTCCAAGTAGACAGCTTTTCTGGCAATCCCAATTTATGTGGAACACCACTTCCAAAGGCATGCCCCCCTACTCCTCCTCCACATGCAAAGAAAGACATAAAATCCTTCATTGATGGTTTGGCTATTTATTCGGGTTATGTAATTCTTGGTGTAATGGTCCTGTTTTTCTTTGCCTTCAAATTGGTAAGGAAATTAAAAACCAAAGAAGAAGCATTAATCGTTGAAATGAAGGAAGTGGCAGAAGAAACTAGTGGTGAAAGGCCTAGAGAAATTTCCTCTGAAACTAGGAGTAGCATTGGGATGAAATCCGAGTATTCAATGTCATCCCTTGAAAGTGGGATGAATACATCAACTCTTGTTGTTTTTTCAAACCCAGCATCAAAGGAACTGCAACTTGAGGACTTGCTCAAAGCTCCTGCTGAATTGATTGGGAGAGGAAAGAAGGGAAGCCTCTACAAGGTGATGCTAGACAATGGTTTTTTTTTGGCAGTCAAGAGGATCAAGGATTGGGGAATTCCAAAACAAGATTTTGGGAAAAGGATGGCCAAGATTGGCCAAGTGAAGCATCCATACGTACTGCCACCTGTTGCATATTATTGCTCACGAGATGAGAAGCTCCTAGCATATGAATACATGGAGAATGGGAATCTCTTCAAGATGCTATGCGGATCCCCAAGTGGCCAATCTTTTGACTGGGGGAGCAGACTTAATGTTGCTGCTAAAATAGCTGATGCATTGGCTTATATGCATGAGGAGCTTTGTGGAAGTGGAATTGCTCACGGTAACTTGAAATCAAGTAACATTTTATTTGGCAAGAATATGGATCCATACATAAGCGAATATGGTCTTATGGTGAGTGAAAATAAAGCTCAAAGTGCAATTTCTCAAGGCAAAAGTCTCAAAAACAAGAGTCTGAGTGCTGCTAGTGCTCATGCATATAACACCTTCAAAGTTGATACGTATGCCTTTGGTGTGATACTTCTAGAGCTGCTGACCGGAAAAGTAGTTGAAAATAGTGGGTTCAATCTGGCTAAATGGGTGAGTTCAGTGCTCAGAGAGGAATGGACATTTGAAGTTTTTGACAAGTCCTTAATCTCACAAGGTGCTAGTGAAGAGAGGATGGTGAACTTGTTGCAGGTGGCATTAAAATGCATAAATCCTTCTCCAACTGATAGACCAAGTATGAGTGAAGTTGCTGTCATGACAATTACATTGAAAGAGGAAGAAGAAAGATACATAACCTTCGAAAGTTCCACCCATTAG 1899 0.4049 MVGVNPIWGLFIVIFLFFPMTYSEDEVVKQALVRFMDKLAQGNPQRDAKYLSWNLSSDPCNGNWYGVSCLEGNVNTIVVDDSSLRGTLDASSLCMAKSLQSLSLKKNNLHGLIPEDIGTCKSLNHLYLSENNFSGDLPISLAELGNLERLNIASNNFSGELYNVIHVSGLISFLAENNKFTGEIPDFNFSKLLEFNVSNNNLEGPLPDFRGGFQVDSFSGNPNLCGTPLPKACPPTPPPHAKKDIKSFIDGLAIYSGYVILGVMVLFFFAFKLVRKLKTKEEALIVEMKEVAEETSGERPREISSETRSSIGMKSEYSMSSLESGMNTSTLVVFSNPASKELQLEDLLKAPAELIGRGKKGSLYKVMLDNGFFLAVKRIKDWGIPKQDFGKRMAKIGQVKHPYVLPPVAYYCSRDEKLLAYEYMENGNLFKMLCGSPSGQSFDWGSRLNVAAKIADALAYMHEELCGSGIAHGNLKSSNILFGKNMDPYISEYGLMVSENKAQSAISQGKSLKNKSLSAASAHAYNTFKVDTYAFGVILLELLTGKVVENSGFNLAKWVSSVLREEWTFEVFDKSLISQGASEERMVNLLQVALKCINPSPTDRPSMSEVAVMTITLKEEEERYITFESSTH 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3837g00054 632 FunFam Leucine-rich repeat receptor protein kinase EMS1 90 186 - -
Gabi3837g00054 632 Coils Coil 274 294 - -
Gabi3837g00054 632 Pfam Leucine rich repeat 98 157 IPR001611 GO:0005515
Gabi3837g00054 632 Pfam Protein kinase domain 353 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3837g00054 632 SUPERFAMILY L domain-like 47 229 - -
Gabi3837g00054 632 Gene3D Transferase(Phosphotransferase) domain 1 424 630 - -
Gabi3837g00054 632 SUPERFAMILY Protein kinase-like (PK-like) 353 613 IPR011009 -
Gabi3837g00054 632 Gene3D Ribonuclease Inhibitor 25 233 IPR032675 -
Gabi3837g00054 632 PANTHER OS05G0588300 PROTEIN 11 616 - -
Gabi3837g00054 632 Gene3D Phosphorylase Kinase; domain 1 314 423 - -
Gabi3837g00054 632 ProSiteProfiles Protein kinase domain profile. 349 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3837g00054 632 Pfam Leucine rich repeat N-terminal domain 29 69 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3837g00054 Gabi-Chr3837 455601 458113 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3837g00054 48 610 Receptor kinase-like Gene Family AT1G48480 35.833 1.89e-98 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Gabi3837g00054 Pkinase 2.2e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3837g00054 - - qsa:O6P43_030895 763.066