Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3837g00053 ATGACACGTGATGAAGGGAATATTAGTAATGAGAATGAAGCAACAACTTTATCATCTCTTAGCAGAATCAGTCCACTTATTTTGCTGGTTATAATAGTACTAGCAGTTATCTTCTTCATCTATGGACTTATTCATTTGGTTCTATGGTTTCTCCTGAAAAGGCCATCATCTTCATCTCTTTATAATTCCAATAGATTTCCAGAAGCCACACGCACCCGTGCTCTTCAAAGGCAGCTTCAACAGCTCTTCAACTTGCATGATTCAGGTCTAGACCAATCTCTCATAGATTCTCTGCCTGTTTTCTACTACAAAGATTTATTGGGTTTGAAAGAACCGTTTGATTGTGCTGTGTGTCTATGTGAACTCTCTAACCATGACATGCTAAGGTTGCTTCCCATGTGCAGCCATGCCTTTCACATGAATTGCCTTGACACATGGCTTCTCTCAAATTCTACATGTCCTCTTTGTAGAGCAACTCTCTCCAACTCTGGTTTCCCTGTGGAGAATCCAATATTCAATGTTGATAATTCTTTGGTTCTGCCAAATATGTTCAGTGTCACGGGTGAGGAAGAGAATGGATGTTGTTCAGATAGTCAAAGGGTGTTTTCTGTGAGACTTGGAAAATTCAGAAATAGTGGATTGGAGAGTGGAGAGGTAGTAGGAGGAGTAGATAATAGTAGTTGTAGTTTGGATACAAGGAGATGCTATTCAATGGGTTCATATCAGTATGTGGTTGGTGATTCAAATCTTCAAGTGGTGTTATCTCAATCTCATGATGATGATAAAGAAAATGGGAATGTGGAGGGAAAGAGGATAGGAAACAGAACAAAAGGTGAGAGCTTCTCTGTTTCCAAGATCTGGCTTTGGTCTAAGAAGACTAAATTTCATAGTTCTAATGCTGCTGCTTTCCCTTGA 915 0.3956 MTRDEGNISNENEATTLSSLSRISPLILLVIIVLAVIFFIYGLIHLVLWFLLKRPSSSSLYNSNRFPEATRTRALQRQLQQLFNLHDSGLDQSLIDSLPVFYYKDLLGLKEPFDCAVCLCELSNHDMLRLLPMCSHAFHMNCLDTWLLSNSTCPLCRATLSNSGFPVENPIFNVDNSLVLPNMFSVTGEEENGCCSDSQRVFSVRLGKFRNSGLESGEVVGGVDNSSCSLDTRRCYSMGSYQYVVGDSNLQVVLSQSHDDDKENGNVEGKRIGNRTKGESFSVSKIWLWSKKTKFHSSNAAAFP 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3837g00053 304 CDD RING-H2_EL5-like 114 157 - -
Gabi3837g00053 304 SMART ring_2 115 156 IPR001841 -
Gabi3837g00053 304 Pfam Ring finger domain 114 157 IPR001841 -
Gabi3837g00053 304 ProSiteProfiles Zinc finger RING-type profile. 115 157 IPR001841 -
Gabi3837g00053 304 FunFam E3 ubiquitin-protein ligase ATL6 78 163 - -
Gabi3837g00053 304 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 19 287 - -
Gabi3837g00053 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 164 IPR013083 -
Gabi3837g00053 304 SUPERFAMILY RING/U-box 94 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3837g00053 Gabi-Chr3837 450971 451915 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3837g00053 15 300 C3H Transcription Factor Family AT2G18650 42.151 3.01e-55 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3837g00053 - - vvo:131605164 390.578