Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3837g00048 ATGGTGGCAAGATCATGCATGAATTTGTTGAACTTGGTGTCAGGGGACATTTATAATTTCCCTCAATCTCCCAGAGCTCTTCCCCGAGTTATGACTGTTCCAGGAATTATGTCTGATGTAGATGGCAAATGCAGGGACAATGATGATTCAAATGCTTTCTCGTCAGAATACAATCGCAAGATAATTATAGTAGCAAATTTTCTTCCTCTCAATGCTCAGAAGGACAAAATATCTGGCAAATGGTGCTTTAGTTATGACGAAGATTCAATTTTGTTGCAATTAAAGGATGGTCTCCCTTTAGACACTGGTGTTGTTTATGTCGGATCGCTGAAGGTTGATGTTGATGCTACTGAACAAGATAAAGTTTCTGTCGAGTTGCTGGAGGAATTCAATTGCTTGCCTACCTTTATTCCTTCAGACCTCCAAAAACAATTTTATAATGGATTCTGCAAGCAACATTTGTGGCCTCTATTCCATTACATGCTGCCCATGTATCCACATTACTGTAATCGCTTTGATAGGTCACTGTGGCAGGCTTATGTTTCTGCTAACAAGAGATTTGCAGACAAAGTCTTGGAAGTCATTAATCCAGAATATGATTACGTATGGGTTCATGATTATCATCTTATGGTTCTTGCAACATTTTTGCGGAAGAAGTATTGTCGTGTCAAGCTAGGATTTTTCCTCCACAGTCCATTTCCTTCATCGGAAATATTTCGCGCTCTGCCTGTTAGGGATGAAATATTGAAAGCACTACTTAATGCAGATTTAATTGGTTTTCATACATTTGATTATGCTCGCCATTTTCTATCCTGCTGCAGTCGAATTCTTGGCTTAAAATATGAATGCAAAAGGGGTTACATTCAACTTGAATACTTTGGCCGTGTAATATTCATCAAAATTTTGCCCGTTGGGATTCATATGGGTCGACTTCAATCTGCCTTAGATCACCCTTCTACTTTAGCCAAAGTCAGAGAAATCAGTGAGAAATTTAAGGGGAAAAAACTTATTCTTGGTGTTGATGATATGGATGTTTTTAAAGGTATCGGCCTAAAGTTCTTGGCCATAGAACAACTCCTTCAACAATATCCAGAATTGCAGGGTGAATTAATACTGATCCAAATTGTAAATCCACCTAGGAGCACTGGCAATGATATTGAGGAAGAAAAGAAGGAGATATACATTACTGCCAAAAGGATAAATGAAAGGTTTAGTTTGCCAGGTTATGAACCTGTCATCATCATTGATCAACCTATTTCTTTATATGAGAAGACATCATACTATGCTTTGGCAGAATGTTGCATTGTGAATGCGGTGCGGGATGGTATGAATTTGGTTCCTTACAAATACGTTGTCTGCAGGCATGGGAGTCCTAAAATGGATGAAGCTTTAGAAATTGCTTCTGAATCCCCTCGTACAAGTGCACTTGTTGTTTCTGAGTTTATAGGTTGCACTCCATCTCTTAGTGGGGCAATCAGGGTAAACCCATGGGACATTAATGCTGTGGCTGATGCACTGAATTTGGCCATCACAATACCTAGTGGAGAGAAACAACTGCGTCATGAGAATCACTATCGATATGTTAGCTCTCATGATGTAGCTTACTGGGTCCGATGTTTTATGAAAGATCTAGAGCACTCGTGCAGGGATCACTATAATAAAAATTGCTGGGGCTTTGGCTTTGGCCTGAGTTTCAGAATTTTATCTCTTTCTCCTAGTTTCAGTAAGTTGTCTATAGACCACATTGTCTCTGCATATAGAAGGAAAAATTGCAGGGCACTGTTTTTGGATTATGATGGTACAATCATACCTCAAACATCCATTGTTAAAACCCCTGGTCCTGAAGTCATAACTGTTCTGAATAACCTTTGCAATGACCCTAACAACATTGTGTTTATAGTAAGTGGCAGGGGGAAAACCACACTGAGTGAATGGTTCGATCAGATTGAGAATCTTGGTATAGCAGCTGAGCATGGTTATTTTCTAAGGTGGGGTCAACAATCAACTTGGGAAATAAGTCATCCAAGTACAACTTGGGAAATAAGTCATCCAAGTACTAATTTTTCTTGGAAAAGGATTGTTGAACCTGTAATGAGATTGTATACTGAGGCAACGGATGGCTCCTATATAGAGACCAAAGAGAGTGCCTTGGTATGGCACTACTATGATGCTGATCCTGATTTTGGATCTTGGCAAGCCAAGCAGCTGTTTGATCACCTTGAAAGTTTATTTGCAAATGAACCTGTAGTTGTTAAGAAGGGAAAGCATATTATAGAAGTCAAGTCACAGGGAATCACTAAAGGGTTAGTTGCAGAGGAAGTTCTGTCTACAATGGCCAGGGACGGGAAATTGCCAGATTTTGTATTGTGCATAGGGGATGATAGATCTGATGAGGATATGTTTGAGAGCTTATTAACCAAAGCTTATAGTGGAACCTCTTCTCCTGCACCAGAAATCTATGCATGCACTGTTGGTCAGAAACCAAGTAAAGCTAGGTACTACTTAGATGATGTTGTGGATGTGATGAGGTTGCTTCAAGCTCTTGGTACCGTTTCAGTGCCTTAA 2565 0.3969 MVARSCMNLLNLVSGDIYNFPQSPRALPRVMTVPGIMSDVDGKCRDNDDSNAFSSEYNRKIIIVANFLPLNAQKDKISGKWCFSYDEDSILLQLKDGLPLDTGVVYVGSLKVDVDATEQDKVSVELLEEFNCLPTFIPSDLQKQFYNGFCKQHLWPLFHYMLPMYPHYCNRFDRSLWQAYVSANKRFADKVLEVINPEYDYVWVHDYHLMVLATFLRKKYCRVKLGFFLHSPFPSSEIFRALPVRDEILKALLNADLIGFHTFDYARHFLSCCSRILGLKYECKRGYIQLEYFGRVIFIKILPVGIHMGRLQSALDHPSTLAKVREISEKFKGKKLILGVDDMDVFKGIGLKFLAIEQLLQQYPELQGELILIQIVNPPRSTGNDIEEEKKEIYITAKRINERFSLPGYEPVIIIDQPISLYEKTSYYALAECCIVNAVRDGMNLVPYKYVVCRHGSPKMDEALEIASESPRTSALVVSEFIGCTPSLSGAIRVNPWDINAVADALNLAITIPSGEKQLRHENHYRYVSSHDVAYWVRCFMKDLEHSCRDHYNKNCWGFGFGLSFRILSLSPSFSKLSIDHIVSAYRRKNCRALFLDYDGTIIPQTSIVKTPGPEVITVLNNLCNDPNNIVFIVSGRGKTTLSEWFDQIENLGIAAEHGYFLRWGQQSTWEISHPSTTWEISHPSTNFSWKRIVEPVMRLYTEATDGSYIETKESALVWHYYDADPDFGSWQAKQLFDHLESLFANEPVVVKKGKHIIEVKSQGITKGLVAEEVLSTMARDGKLPDFVLCIGDDRSDEDMFESLLTKAYSGTSSPAPEIYACTVGQKPSKARYYLDDVVDVMRLLQALGTVSVP 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3837g00048 854 CDD GT20_TPS 60 545 IPR001830 GO:0003824|GO:0005992
Gabi3837g00048 854 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 60 548 - -
Gabi3837g00048 854 Pfam Trehalose-phosphatase 595 837 IPR003337 GO:0003824|GO:0005992
Gabi3837g00048 854 NCBIfam HAD-IIB family hydrolase 594 803 IPR006379 -
Gabi3837g00048 854 FunFam Trehalose-6-phosphate synthase 2 684 763 - -
Gabi3837g00048 854 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 53 312 - -
Gabi3837g00048 854 Gene3D Glycogen Phosphorylase B; 52 312 - -
Gabi3837g00048 854 Pfam Glycosyltransferase family 20 60 545 IPR001830 GO:0003824|GO:0005992
Gabi3837g00048 854 SUPERFAMILY HAD-like 592 849 IPR036412 -
Gabi3837g00048 854 Gene3D Glycogen Phosphorylase B; 313 529 - -
Gabi3837g00048 854 Gene3D - 591 683 IPR023214 -
Gabi3837g00048 854 Gene3D - 731 853 IPR023214 -
Gabi3837g00048 854 CDD HAD_TPP 593 843 - -
Gabi3837g00048 854 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 28 848 IPR001830 GO:0003824|GO:0005992
Gabi3837g00048 854 FunFam Alpha,alpha-trehalose-phosphate synthase 314 529 - -
Gabi3837g00048 854 FunFam Trehalose-6-phosphate synthase 10 731 854 - -
Gabi3837g00048 854 NCBIfam trehalose-phosphatase 592 848 IPR003337 GO:0003824|GO:0005992
Gabi3837g00048 854 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 591 717 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3837g00048 Gabi-Chr3837 428730 434401 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3837g00048 1 852 Trehalose Biosynthesis Gene Families AT1G23870 65.376 0.0 1212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3837g00048 K16055 - gmx:100808800 1409.43