Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3837g00034 ATGGAACCGGGCTCGAGATTAGCTGGTCCTTCTGGGGTTGTGGTGAAGAATAAGAGCTCTGCTGGGTGTTTGATTGTTAGAAAGAAAGGGGATGGTGGGGTTGGTGGTTCTTCGAGCTCTCGGAAGCAGTATGAATCGAAGAAAGTGAGGAAAAAGCCTAAGGTCGTTTCCAGTGATTCGGGATCAAGCGATGAGTTACCATTACCATTGCCTCCGGCTAGGAGGCTTGGCCCCGAGACCATTCGAGTCTGTAATAGTTTGACCGCTTTCGAGCGGGGCATGGTTGGTGGCGGTGAAATCAGTAGGAAGAGGGAGAGAATGGAGCAAATTAGGCATAATGGGGATGGCGTGGTAGAGGAGAATGGCTTGAAGAGGAGGGAAAGGAAACGTAATAAGTTGGATGTGTTTGATTTCAATGAATACGATGGTAGGGATGTGGAAATGATGAGAAGGAGGAATTTCGATAATAATGGTGTTGGTTTAGGAGGAGGAAGGTTTATGGGAGCAATGCATGCTGCTGGAAGGAGCATTGATAGGGAATTTGAAACCAGTTCAAGCAGACACATCGTTGATAAGAGAAAAAACTCCTATCGTGACAGGGCAAGTGGGTTGTATCTGGAAGATAGTGTTGATCATAGTAGGTTCAAGACGAACAGAGATGGAGCTCAGCAACCTCTGCCCTTGTTGAGGGAGAAGTTTAATTCAGATGAATCCATTAGGGTTCAGGGGAAAAATGGTGTTTTGAAGGTGATGGTTAATAAGAAGAAGGTTGGTGGGCCAATAGAACGCAATGATCATCGCAAACTTGTAGAAACCAGACAAAGTTTGAGGGCTGAGAGCACTCCCAAGAGAAATGTTCTGATCCATCCTTCGCCATACTTGGAAACAAAACCTGTTGAGAAACAGGGTTTACTTGTTAGGCCAGAGAAGAAACAGATATCAACAAGAAAATCATTGTCAAGTAAGGACAGTAAGGGTGATGAGCAGGATTCAGATAACAGTGACACATCATTGAATCTGGGAGTAAAAAGTACTGAAGCTCGCATGTCTTCCAAGAAGATAACCTCTGAAGATGAACAGACTCCTATGAATGAAAAACTCCCAGCTACAAAAATAAAAGAAGGGAAAATCAAGCGTGGTAGTGGCACAGAAAAGCAGAAACTACGAGAAAGAATACGGGAGATGCTACTGAATGCAGGTTGGACCATAGACTATCGCCCTCGAAGGAATAGAGACTATCTAGATGCAGTTTACATTAATCCAGGGGGTACAGCCTATTGGTCTATCATCAAGGCATATGATGCACTTCAAAAACAATCGAATGATGATGATCATGAAGCGAAGCCCAAAGGGGAGAGTTCATCTTTTGCTCCTATCTCTGATGATGTGCTCCGTCAATTGACAAGGAAAACTCGGAAGAAGATGGAAAAAGACTTGAAGAAGAAGCAAAGATATGATAGTGAGAGTGATAGTGGAAAAGAGACGCACATTAAAAGACCTGCCAGCAAAAAAAAGCATGCCATGAATGGCATTGATAGTGATAGCAATGAAGAGAAGTTAAGCTCCTTTATAAAGCAGGGAAGTAAATCAATGAAAACTAAAATGATTGAAAATGCTGTCACTGGTGGTAGCTCTAATAGCCGGAATGCTACCCATCACTCAAATGATGGAACTGAAAAATCATTTTCTGGAAATGATCCTCATCTACATGGAAGGAAAAGTAGAAAACATGGACGGTGCACTTTATTAGTTCGTAGTTCTAACAAGGGATTAAATTCAGAATCTGATGACTTTGTTCCATATATGGGCAAACGAACAGTGCTTTCCTGGTTGGTTGATTCTGGGATAGTTCAGTTAAGCCAAAAGGTTCAGTACCGTAGAAGGAAGCGAGTAATGCTGGAGGGGTGGATCACAAGAGATGGCATTCATTGTGGCTGCTGTAGTAAAATCCTCACGGTTTCAAAGTTTGAGCTTCATGCTGGAAGCAAATTGCCCAAGCCATATCAAAACATATATTTGGATTCTGGAGTTTCGCTTCTACAGTGCCAGATAGATGCATGGGATAGACAAAAGAATTCTGAGAAGATCAGCTTCCATTCAGTAGATGTTGATGGTAATGATCCAAATGATGATACTTGTGGTATATGCGGAGATGGAGGGGATTTAATCTGTTGTGATGGTTGTCCATCAACATTTCATCAGAGTTGCTTGGATATACAGATGCTTCCCCCTGGTGAATGGCATTGTCCAAATTGCACCTGTAAATTTTGTGGAGTAGCCAGTGAAACTATTGATAAAGAAGATGATGCAACTGTATATGCCCTACACACTTGTGACTTGTGCGAGAAAAAATATCATGACTGTTGTACTAAGGATTTGGGTGCCCTTCCTACTAACTCCAATATGTCAGGGTCTTCCTTTTGTGGAAAAGGCTGCAAAGAGCTTTTTGAGCACTTGAAGAAGTACCTTGGTGCCAAGCATGAACTTGATGCAGGCTTTACATGGTCTCTTATTCATAGAACAGATGACGACGCAGAGGCAGCTAGTAGGGGAATTACCCAGAGAGTGGAATGCAACTCCAAGCTAACTGTTGCACTGACTGTGATGGATGAATGCTTTTTACCAGTTGTTGATCGGAGGAGTGGGATCAATTTAATCCATAATGTTTTATATAATAGTGGGTCAAACTTCAGTCGGTTGAATTATAGTGGCTTTTATACTGCTATTTTGGAGCGAGGGGATGAAATAATTTGTGCAGCATCTCTCAGGTTCCATGGGACTAAGTTAGCAGAGATGCCATTCATTGGAACTCGTCATATATATAGGCATCAGGGGATGTGCCGCCGTCTTTTTTCTGCCATTGAATTGGCTCTTTGCTCACTGAAGGTTGAGAAACTTGTCATTCCCGCAATTTCTGAACTGATTCATACTTGGACAACAGTTTTTGGCTTCACACATCTTGAGGAAATTCTCAGGCAAGAAATGAGGTCGTTGAATATGTTGGTCTTCCCTGGTATTGATATGTTACAGAAGCTGCTAGTGGAGCAAGGAAAACTTGAGGGTGCTGAGAAAATTGAAAATGGAGATGAGGTTTTAATTAAGCCCAATATGGCTAATAGGTTAGATATGGATTCCTCAGCTCTGCAAGATCCTCGAGGAAGTGATGATGCTAGTTCAAATCCTGCCAATGAGATAAATAATGAATGTAGTGAGGATGCTTCTCAAGAACTAAACAATCAAGTTTTGGTTGGCATGACTGTATGCTCCAAATCTCATTCTGAGGAAAGATTATCTGATTCTCTTTCTGATAATTGTGTTTCTCCTTCTAGTACTAGTCATGGAGTACTAGAAAAGCAAAATGAAATAGTGACAGCTTCCCCCGTTAATGATAAATTGCATCCTTCTACCAAATGTCAACTCATTTCTCCAAATGACATTTCTATGACTAGTCCTCCATTAGATGCTCCAGATTGCCATGGAATTCCAGCTTTGGGTCAGGAAACTGCTTGTTCTGACCCTGATTCTGCAAATAACCCGGTAGAACCTATTTTTGACAGGAAATGTGATAAGTTCACTGATATGAATTGTGATTCATCAGAGCTTGACATTAATCCTGTGTTGGATTCTCAAGTGGCGGATAATGCCTTGTCTTCTAAAGAGGTTGATATGAATGATGCCCATGATGAGTTTCTTGAAGCTGACCCTTCAGTGGATTTATCTCGAGAGAATATAACCAAGGAGAATAATACAAATGTAGATGTCTCGGGTTGTGTTCCTAATCATACTGGTGAGAGTTTCTTGCAAGTAAGATCTGATTTGAATGGTGAAATTGCATATCTGGGAGAAAAGAATTTACATTTGGAAACAGAAGTTGCTTCAAATGATATGCATTTTGATGAAACTGGGCTAAACGCTTCTGGTGATTGTTCTGATACTGATCTAGTCATCTAG 3951 0.4148 MEPGSRLAGPSGVVVKNKSSAGCLIVRKKGDGGVGGSSSSRKQYESKKVRKKPKVVSSDSGSSDELPLPLPPARRLGPETIRVCNSLTAFERGMVGGGEISRKRERMEQIRHNGDGVVEENGLKRRERKRNKLDVFDFNEYDGRDVEMMRRRNFDNNGVGLGGGRFMGAMHAAGRSIDREFETSSSRHIVDKRKNSYRDRASGLYLEDSVDHSRFKTNRDGAQQPLPLLREKFNSDESIRVQGKNGVLKVMVNKKKVGGPIERNDHRKLVETRQSLRAESTPKRNVLIHPSPYLETKPVEKQGLLVRPEKKQISTRKSLSSKDSKGDEQDSDNSDTSLNLGVKSTEARMSSKKITSEDEQTPMNEKLPATKIKEGKIKRGSGTEKQKLRERIREMLLNAGWTIDYRPRRNRDYLDAVYINPGGTAYWSIIKAYDALQKQSNDDDHEAKPKGESSSFAPISDDVLRQLTRKTRKKMEKDLKKKQRYDSESDSGKETHIKRPASKKKHAMNGIDSDSNEEKLSSFIKQGSKSMKTKMIENAVTGGSSNSRNATHHSNDGTEKSFSGNDPHLHGRKSRKHGRCTLLVRSSNKGLNSESDDFVPYMGKRTVLSWLVDSGIVQLSQKVQYRRRKRVMLEGWITRDGIHCGCCSKILTVSKFELHAGSKLPKPYQNIYLDSGVSLLQCQIDAWDRQKNSEKISFHSVDVDGNDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQMLPPGEWHCPNCTCKFCGVASETIDKEDDATVYALHTCDLCEKKYHDCCTKDLGALPTNSNMSGSSFCGKGCKELFEHLKKYLGAKHELDAGFTWSLIHRTDDDAEAASRGITQRVECNSKLTVALTVMDECFLPVVDRRSGINLIHNVLYNSGSNFSRLNYSGFYTAILERGDEIICAASLRFHGTKLAEMPFIGTRHIYRHQGMCRRLFSAIELALCSLKVEKLVIPAISELIHTWTTVFGFTHLEEILRQEMRSLNMLVFPGIDMLQKLLVEQGKLEGAEKIENGDEVLIKPNMANRLDMDSSALQDPRGSDDASSNPANEINNECSEDASQELNNQVLVGMTVCSKSHSEERLSDSLSDNCVSPSSTSHGVLEKQNEIVTASPVNDKLHPSTKCQLISPNDISMTSPPLDAPDCHGIPALGQETACSDPDSANNPVEPIFDRKCDKFTDMNCDSSELDINPVLDSQVADNALSSKEVDMNDAHDEFLEADPSVDLSRENITKENNTNVDVSGCVPNHTGESFLQVRSDLNGEIAYLGEKNLHLETEVASNDMHFDETGLNASGDCSDTDLVI 1316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3837g00034 1316 MobiDBLite consensus disorder prediction 465 497 - -
Gabi3837g00034 1316 MobiDBLite consensus disorder prediction 274 386 - -
Gabi3837g00034 1316 MobiDBLite consensus disorder prediction 1044 1066 - -
Gabi3837g00034 1316 SMART PHD_3 712 753 IPR001965 -
Gabi3837g00034 1316 ProSitePatterns Zinc finger PHD-type signature. 713 752 IPR019786 -
Gabi3837g00034 1316 MobiDBLite consensus disorder prediction 440 520 - -
Gabi3837g00034 1316 MobiDBLite consensus disorder prediction 302 332 - -
Gabi3837g00034 1316 MobiDBLite consensus disorder prediction 369 386 - -
Gabi3837g00034 1316 SUPERFAMILY FYVE/PHD zinc finger 695 755 IPR011011 -
Gabi3837g00034 1316 MobiDBLite consensus disorder prediction 540 562 - -
Gabi3837g00034 1316 MobiDBLite consensus disorder prediction 26 74 - -
Gabi3837g00034 1316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 701 796 IPR013083 -
Gabi3837g00034 1316 Pfam Tify domain binding domain 635 685 IPR032308 -
Gabi3837g00034 1316 MobiDBLite consensus disorder prediction 540 579 - -
Gabi3837g00034 1316 CDD PHD2_CHD_II 713 752 - -
Gabi3837g00034 1316 MobiDBLite consensus disorder prediction 1051 1066 - -
Gabi3837g00034 1316 Pfam PHD-finger 713 755 IPR019787 -
Gabi3837g00034 1316 MobiDBLite consensus disorder prediction 333 349 - -
Gabi3837g00034 1316 ProSiteProfiles Zinc finger PHD-type profile. 710 755 IPR019787 -
Gabi3837g00034 1316 PANTHER PHD FINGER PROTEIN 12 334 1129 IPR042163 GO:0003714|GO:0045892
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3837g00034 Gabi-Chr3837 295915 303710 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3837g00034 1 1051 PHD Transcription Factor Family AT4G14920 49.162 0.0 927
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gabi3837g00034 TDBD 1.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3837g00034 - - mtr:25485216 1848.56