Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3837g00029 ATGAATGGTGCTGCAATTGTTGAGGCAGATAACTCTGAGTTTGTGGAAGTGGATCCTACGGGAAGATATGGAAGATACAATGAAATTCTTGGCAAAGGAGCTTCCAAGACAGTCTACAAAGCATTTGATGAGTATGAAGGGATAGAAGTAGCATGGAACCAAGTAAAGCTTTATGACTTTTTGCAGAATCCTGAAGACCTTGAGAGGTTATACTGTGAAATTCATCTTCTCAAGACATTGAAACACAAGAACATCATGAAGTTCTGTACCTCCTGGGTTGATACTGCCAACAGGCACATTAACTTTGTCACTGAGATGTTTACCTCTGGGACTCTTAGACAGTACAGGTTTAAACATAAAAGAGTTAACATCAGAGCTATTAAGCACTGGTGCAGACAGATTTTGGAAGGGCTCCATTATCTCCACAGCCATGACCCTCCTGTGATTCATAGAGATCTCAAATGTGATAACATCTTCATCAATGGCAACCAAGGGGAAATCAAAATTGGTGATCTTGGTCTTGCTGCAATTCTCCGCAAATCTAATGCTGCTCGTTGCACACCTGAGTTTATGGCTCCAGAAGTGTACGAAGAGGATTACAATGAATTGGTTGACATATACTCTTTTGGAATGTGCATCTTGGAGATGGTCACCTTTGAATATCCTTACAGTGAATGTAACCATCCTGCTCAAATTTACAAAAAAGTTGTCTCTGGGAAGAAGCCAGAAGCTCTTTACAAAGTAAATGATCCTGAGGTTAGGCAGTTTGTAGAGAAATGCTTAGCAACTGTGTCCCTCAGACTTTCAGCTAAGGAACTCTTGAAGGACCCTTTTCTCCAAATTGATGATTATGGATCTGACTTGAAAGCAGTTCAGTATCAAAGAGATTGCTATGAAGTAACCCCAATAATTAGACAACCTCTGAATGGAATTCATAGCATTAACAACGCCTTCATGAGTGGGTACACTGATAATCTTGGTGGTTATGGACTTATATCTGAATTGGATTATCATCAAGAAGATTTTGAAACGAGTGAGATTGATCTCTTTGATTGTGAAGAGGATGATGATTTGGCTGAAGTTGACACCACAATTAAAGGAAGGAGAAGAGAAGATGATGGCATCTTTCTAAGAATCAGACTAGCAGATAAGGAAGGTCGAGTTCGAAACATCTACTTCTCGTTTGACACTGAGACTGATACTGCATTGAATGTTGCAAATGAAATGGTAGTTGAGCTTGATATGACTGACCAAGATGTAACAAAATTAGCAAATATGATAGATAATGAAATTTTAACCTTGGTTCCAGAGTGGCAAATGGGACCCAGAATAGAGGAAATTTCAGAATGTTCAAGTGCAAGTTTCTGCCACAATTGTGCTGCAAACGGTTCCATATTTGATTATGTATCACCAATTAATCCATGTGCCAAGAATCTGCAATTTCTTCATTGTTCTAAAAGCGGATGTGCTGCAGTTCATGGTCGATTTGAGGAGATTACATACCAAGTTGAAGGGTCTGCAAATAGTGCTACAGAAGGTACACCAGCTGAATCAAGCAAATCCACTGGCATTCATTATACCGATATATGGGCTCAGAGAGATGAACCGGAGTTATGTCCTGAAGGGTCAAAAGACATACATTGTGACCAAGCTCATGTTGCATCTAGCCTATCAACCATCAAGGATGATGGAAGCACCAATAATGTTGATGATCAAAGTGGTCTCAATACTAGAAAGTCTCCTTCTAGGACTGTATCAGATTGTGTTCTCTTGGACTACGAGAATGAAATTAGGCAAGAACTAAGATGGCTCAAAGCAAAATACCAAATGCAGTTAAGAGAGCTTAGAGACCATCAACTAGGGGGTAAACCAAAATTTACTTGCTTATCTCCTGACTCTAAAAAATTAGATCATGGGAAAGATGGAGTTCTGAGGCTATCAGTTACACCCCATTTGAAGAAACAGCACAACAAACCACTATTGAGATATATAGCTTCTGGGAAGCATTTTCCTGTTGATGCTGAGAAATGCACCACTTTGGCTGATCAAATGATTCAAAATGTTGATGAGACGGGTCAGTCTAACAGTCCTGAGCATATGGTCACAGCCAAAGATTTCTTTACACGAGCTTTGCTTCCACAGTCGCTTCACAGGGCAACCTCGCTTCCTGTTGATGCTGTAGATGTCTAG 2190 0.4005 MNGAAIVEADNSEFVEVDPTGRYGRYNEILGKGASKTVYKAFDEYEGIEVAWNQVKLYDFLQNPEDLERLYCEIHLLKTLKHKNIMKFCTSWVDTANRHINFVTEMFTSGTLRQYRFKHKRVNIRAIKHWCRQILEGLHYLHSHDPPVIHRDLKCDNIFINGNQGEIKIGDLGLAAILRKSNAARCTPEFMAPEVYEEDYNELVDIYSFGMCILEMVTFEYPYSECNHPAQIYKKVVSGKKPEALYKVNDPEVRQFVEKCLATVSLRLSAKELLKDPFLQIDDYGSDLKAVQYQRDCYEVTPIIRQPLNGIHSINNAFMSGYTDNLGGYGLISELDYHQEDFETSEIDLFDCEEDDDLAEVDTTIKGRRREDDGIFLRIRLADKEGRVRNIYFSFDTETDTALNVANEMVVELDMTDQDVTKLANMIDNEILTLVPEWQMGPRIEEISECSSASFCHNCAANGSIFDYVSPINPCAKNLQFLHCSKSGCAAVHGRFEEITYQVEGSANSATEGTPAESSKSTGIHYTDIWAQRDEPELCPEGSKDIHCDQAHVASSLSTIKDDGSTNNVDDQSGLNTRKSPSRTVSDCVLLDYENEIRQELRWLKAKYQMQLRELRDHQLGGKPKFTCLSPDSKKLDHGKDGVLRLSVTPHLKKQHNKPLLRYIASGKHFPVDAEKCTTLADQMIQNVDETGQSNSPEHMVTAKDFFTRALLPQSLHRATSLPVDAVDV 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3837g00029 729 Pfam Protein kinase domain 27 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3837g00029 729 Gene3D Phosphorylase Kinase; domain 1 8 105 - -
Gabi3837g00029 729 Gene3D Transferase(Phosphotransferase) domain 1 107 284 - -
Gabi3837g00029 729 FunFam probable serine/threonine-protein kinase WNK9 107 284 - -
Gabi3837g00029 729 ProSiteProfiles Protein kinase domain profile. 24 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3837g00029 729 CDD STKc_WNK 22 279 - -
Gabi3837g00029 729 MobiDBLite consensus disorder prediction 559 582 - -
Gabi3837g00029 729 SMART serkin_6 24 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3837g00029 729 FunFam Probable serine/threonine-protein kinase WNK1 9 105 - -
Gabi3837g00029 729 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Gabi3837g00029 729 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 10 621 - -
Gabi3837g00029 729 SUPERFAMILY Protein kinase-like (PK-like) 27 280 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3837g00029 Gabi-Chr3837 280446 283870 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3837g00029 1 633 MAP Kinase Kinase Kinase AT3G22420 49.480 0.0 603
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Gabi3837g00029 Pkinase 2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3837g00029 K08867 - gmx:100804179 1234.55