Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3837g00027 ATGAATGGTGCTGCAATTGTTGAGGCAGATAACTCTGAGTTTGTGGAAGTGGATCCTACGGGAAGATATGGAAGATACAATGAAATTCTTGGCAAAGGAGCTTCCAAGACAGTCTACAAAGCATTTGATGAGTATGAAGGGATAGAAGTAGCATGGAACCAAGTAAAGCTTTATGACTTTTTGCAGAATCCTGAAGACCTTGAGAGGTTATACTGTGAAATTCATCTTCTCAAGACATTGAAACACAAGAACATCATGAAGTTCTGTACCTCCTGGGTTGATACTGCCAACAGGCACATTAACTTTGTCACTGAGATGTTTACCTCTGGGACTCTTAGACAGTACAGGTTTAAACATAAAAGAGTTAACATCAGAGCTATTAAGCACTGGTGCAGACAGATTTTGGAAGGGCTCCATTATCTCCACAGCCATGACCCTCCTGTGATTCATAGAGATCTCAAATGTGATAACATCTTCATCAATGGCAACCAAGGGGAAATCAAAATTGGTGATCTTGGTCTTGCTGCAATTCTCCGCAAATCTAATGCTGCTCGTTGTGTTGGCACACCTGAGTTTATGGCTCCAGAAGTGTACGAAGAGGATTACAATGAATTGGTTGACATATACTCTTTTGGAATGTGCATCTTGGAGATGGTCACCTTTGAATATCCTTACAGTGAATGTAACCATCCTGCTCAAATTTACAAAAAAGTTGTCTCTGGGAAGAAGCCAGAAGCTCTTTACAAAGTAAATGATCCTGAGGTTAGGCAGTTTGTAGAGAAATGCTTAGCAACTGTGTCCCTCAGACTTTCAGCTAAGGAACTCTTGAAGGACCCTTTTCTCCAAATTGATGATTATGGATCTGACTTGAAAGCAGTTCACATTAACAACGCCTTCATGAGTGGGTACACTGATAATCTTGGTGGTTATGGACTTATATCTGAATTGGATTATCATCAAGAAGATTTTGAAACGAGTGAGATTGATCTCTTTGATTGTGAAGAGGATGATGATTTGGCTGAAGTTGACACCACAATTAAAGGAAGGAGAAGAGAAGATGATGGCATCTTTCTAAGAATCAGACTAGCAGATAAGGAAGGTCGAGTTCGAAACATCTACTTCTCGTTTGACACTGAGACTGATACTGCATTGAATGTTGCAAATGAAATGGTAGTTGAGCTTGATATGACTGACCAAGATGTAACAAAATTAGCAAATATGATAGATAATGAAATTTTAACCTTGGTTCCAGAGTGGCAAATGGGACCCAGAATAGAGGAAATTTCAGAATGTTCAAGTGCAAGTTTCTGCCACAATTGTGCTGCAAACGGTTCCATATTTGATTATGTATCACCAATTAATCCATGTGCCAAGAATCTGCAATTTCTTCATTGTTCTAAAAGCGGATGTGCTGCAGTTCATGGTCGATTTGAGGAGATTACATACCAAGTTGAAGGGTCTGCAAATAGTGCTACAGAAGGTACACCAGCTGAATCAAGCAAATCCACTGGCATTCATTATACCGATATATGGGCTCAGAGAGATGAACCGGAGTTATGTCCTGAAGGGTCAAAAGACATACATTGTGACCAAGCTCATGTTGCATCTAGCCTATCAACCATCAAGGATGATGGAAGCACCAATAATGTTGATGATCAAAGTGGTCTCAATACTAGAAAGTCTCCTTCTAGGACTGTATCAGATTGTGTTCTCTTGGACTACGAGAATGAAATTAGGCAAGAACTAAGATGGCTCAAAGCAAAATACCAAATGCAGTTAAGAGAGCTTAGAGACCATCAACTAGGGGGTAAACCAAAATTTACTTGCTTATCTCCTGACTCTAAAAAATTAGATCATGGGAAAGATGGAGTTCTGAGGCTATCAGTTACACCCCATTTGAAGAAACAGCACAACAAACCACTATTGAGATATATAGCTTCTGGGAAGCATTTTCCTGTTGATGCTGAGAAATGCACCACTTTGGCTGATCAAATGATTCAAAATGTTGATGAGACGGGTCAGTCTAACAGTCCTGAGCATATGGTCACAGCCAAAGATTTCTTTACACGAGCTTTGCTTCCACAGTCGCTTCACAGGGCAACCTCGCTTCCTGTTGATGCTGTAGATGTCTAG 2133 0.4023 MNGAAIVEADNSEFVEVDPTGRYGRYNEILGKGASKTVYKAFDEYEGIEVAWNQVKLYDFLQNPEDLERLYCEIHLLKTLKHKNIMKFCTSWVDTANRHINFVTEMFTSGTLRQYRFKHKRVNIRAIKHWCRQILEGLHYLHSHDPPVIHRDLKCDNIFINGNQGEIKIGDLGLAAILRKSNAARCVGTPEFMAPEVYEEDYNELVDIYSFGMCILEMVTFEYPYSECNHPAQIYKKVVSGKKPEALYKVNDPEVRQFVEKCLATVSLRLSAKELLKDPFLQIDDYGSDLKAVHINNAFMSGYTDNLGGYGLISELDYHQEDFETSEIDLFDCEEDDDLAEVDTTIKGRRREDDGIFLRIRLADKEGRVRNIYFSFDTETDTALNVANEMVVELDMTDQDVTKLANMIDNEILTLVPEWQMGPRIEEISECSSASFCHNCAANGSIFDYVSPINPCAKNLQFLHCSKSGCAAVHGRFEEITYQVEGSANSATEGTPAESSKSTGIHYTDIWAQRDEPELCPEGSKDIHCDQAHVASSLSTIKDDGSTNNVDDQSGLNTRKSPSRTVSDCVLLDYENEIRQELRWLKAKYQMQLRELRDHQLGGKPKFTCLSPDSKKLDHGKDGVLRLSVTPHLKKQHNKPLLRYIASGKHFPVDAEKCTTLADQMIQNVDETGQSNSPEHMVTAKDFFTRALLPQSLHRATSLPVDAVDV 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3837g00027 710 Gene3D - 355 435 - -
Gabi3837g00027 710 SMART serkin_6 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3837g00027 710 FunFam Probable serine/threonine-protein kinase WNK1 9 105 - -
Gabi3837g00027 710 MobiDBLite consensus disorder prediction 540 563 - -
Gabi3837g00027 710 Pfam Protein kinase domain 27 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3837g00027 710 Gene3D Transferase(Phosphotransferase) domain 1 107 286 - -
Gabi3837g00027 710 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Gabi3837g00027 710 ProSiteProfiles Protein kinase domain profile. 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3837g00027 710 CDD STKc_WNK 22 281 - -
Gabi3837g00027 710 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 10 602 - -
Gabi3837g00027 710 SUPERFAMILY Protein kinase-like (PK-like) 27 282 IPR011009 -
Gabi3837g00027 710 Gene3D Phosphorylase Kinase; domain 1 8 105 - -
Gabi3837g00027 710 FunFam probable serine/threonine-protein kinase WNK9 107 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3837g00027 Gabi-Chr3837 280446 283870 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3837g00027 1 614 MAP Kinase Kinase Kinase AT3G22420 50.992 0.0 610
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Gabi3837g00027 Pkinase 3.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3837g00027 K08867 - gmx:100804179 1192.56