Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3837g00024 ATGAATGGTGCTGCAATTGTTGAGGCAGATAACTCTGAGTTTGTGGAAGTGGATCCTACGGGAAGATATGGAAGATACAATGAAATTCTTGGCAAAGGAGCTTCCAAGACAGTCTACAAAGCATTTGATGAGTATGAAGGGATAGAAGTAGCATGGAACCAAGTAAAGCTTTATGACTTTTTGCAGAATCCTGAAGACCTTGAGAGGTTATACTGTGAAATTCATCTTCTCAAGACATTGAAACACAAGAACATCATGAAGTTCTGTACCTCCTGGGTTGATACTGCCAACAGGCACATTAACTTTGTCACTGAGATGTTTACCTCTGGGACTCTTAGACAGTACAGGTTTAAACATAAAAGAGTTAACATCAGAGCTATTAAGCACTGGTGCAGACAGATTTTGGAAGGGCTCCATTATCTCCACAGCCATGACCCTCCTGTGATTCATAGAGATCTCAAATGTGATAACATCTTCATCAATGGCAACCAAGGGGAAATCAAAATTGGTGATCTTGGTCTTGCTGCAATTCTCCGCAAATCTAATGCTGCTCGTTGTGTTGGCACACCTGAGTTTATGGCTCCAGAAGTGTACGAAGAGGATTACAATGAATTGGTTGACATATACTCTTTTGGAATGTGCATCTTGGAGATGGTCACCTTTGAATATCCTTACAGTGAATGTAACCATCCTGCTCAAATTTACAAAAAAGTTGTCTCTGGGAAGAAGCCAGAAGCTCTTTACAAAGTAAATGATCCTGAGGTTAGGCAGTTTGTAGAGAAATGCTTAGCAACTGTGTCCCTCAGACTTTCAGCTAAGGAACTCTTGAAGGACCCTTTTCTCCAAATTGATGATTATGGATCTGACTTGAAAGCAGTTCAGTATCAAAGAGATTGCTATGAAGTAACATCTGAATTGGATTATCATCAAGAAGATTTTGAAACGAGTGAGATTGATCTCTTTGATTGTGAAGAGGATGATGATTTGGCTGAAGTTGACACCACAATTAAAGGAAGGAGAAGAGAAGATGATGGCATCTTTCTAAGAATCAGACTAGCAGATAAGGAAGGTCGAGTTCGAAACATCTACTTCTCGTTTGACACTGAGACTGATACTGCATTGAATGTTGCAAATGAAATGGTAGTTGAGCTTGATATGACTGACCAAGATGTAACAAAATTAGCAAATATGATAGATAATGAAATTTTAACCTTGGTTCCAGAGTGGCAAATGGGACCCAGAATAGAGGAAATTTCAGAATGTTCAAGTGCAAGTTTCTGCCACAATTGTGCTGCAAACGGTTCCATATTTGATTATGTATCACCAATTAATCCATGTGCCAAGAATCTGCAATTTCTTCATTGTTCTAAAAGCGGATGTGCTGCAGTTCATGGTCGATTTGAGGAGATTACATACCAAGTTGAAGGGTCTGCAAATAGTGCTACAGAAGGTACACCAGCTGAATCAAGCAAATCCACTGGCATTCATTATACCGATATATGGGCTCAGAGAGATGAACCGGAGTTATGTCCTGAAGGGTCAAAAGACATACATTGTGACCAAGCTCATGTTGCATCTAGCCTATCAACCATCAAGGATGATGGAAGCACCAATAATGTTGATGATCAAAGTGGTCTCAATACTAGAAAGTCTCCTTCTAGGACTGTATCAGATTGTGTTCTCTTGGACTACGAGAATGAAATTAGGCAAGAACTAAGATGGCTCAAAGCAAAATACCAAATGCAGTTAAGAGAGCTTAGAGACCATCAACTAGGGGGTAAACCAAAATTTACTTGCTTATCTCCTGACTCTAAAAAATTAGATCATGGGAAAGATGGAGTTCTGAGGCTATCAGTTACACCCCATTTGAAGAAACAGCACAACAAACCACTATTGAGATATATAGCTTCTGGGAAGCATTTTCCTGTTGATGCTGAGAAATGCACCACTTTGGCTGATCAAATGATTCAAAATGTTGATGAGACGGGTCAGTCTAACAGTCCTGAGCATATGGTCACAGCCAAAGATTTCTTTACACGAGCTTTGCTTCCACAGTCGCTTCACAGGGCAACCTCGCTTCCTGTTGATGCTGTAGATGTCTAG 2103 0.4013 MNGAAIVEADNSEFVEVDPTGRYGRYNEILGKGASKTVYKAFDEYEGIEVAWNQVKLYDFLQNPEDLERLYCEIHLLKTLKHKNIMKFCTSWVDTANRHINFVTEMFTSGTLRQYRFKHKRVNIRAIKHWCRQILEGLHYLHSHDPPVIHRDLKCDNIFINGNQGEIKIGDLGLAAILRKSNAARCVGTPEFMAPEVYEEDYNELVDIYSFGMCILEMVTFEYPYSECNHPAQIYKKVVSGKKPEALYKVNDPEVRQFVEKCLATVSLRLSAKELLKDPFLQIDDYGSDLKAVQYQRDCYEVTSELDYHQEDFETSEIDLFDCEEDDDLAEVDTTIKGRRREDDGIFLRIRLADKEGRVRNIYFSFDTETDTALNVANEMVVELDMTDQDVTKLANMIDNEILTLVPEWQMGPRIEEISECSSASFCHNCAANGSIFDYVSPINPCAKNLQFLHCSKSGCAAVHGRFEEITYQVEGSANSATEGTPAESSKSTGIHYTDIWAQRDEPELCPEGSKDIHCDQAHVASSLSTIKDDGSTNNVDDQSGLNTRKSPSRTVSDCVLLDYENEIRQELRWLKAKYQMQLRELRDHQLGGKPKFTCLSPDSKKLDHGKDGVLRLSVTPHLKKQHNKPLLRYIASGKHFPVDAEKCTTLADQMIQNVDETGQSNSPEHMVTAKDFFTRALLPQSLHRATSLPVDAVDV 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3837g00024 700 SMART serkin_6 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3837g00024 700 FunFam Probable serine/threonine-protein kinase WNK1 9 105 - -
Gabi3837g00024 700 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Gabi3837g00024 700 Gene3D Transferase(Phosphotransferase) domain 1 107 286 - -
Gabi3837g00024 700 Pfam Protein kinase domain 27 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3837g00024 700 ProSiteProfiles Protein kinase domain profile. 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3837g00024 700 Gene3D Phosphorylase Kinase; domain 1 8 105 - -
Gabi3837g00024 700 CDD STKc_WNK 22 281 - -
Gabi3837g00024 700 Gene3D - 345 425 - -
Gabi3837g00024 700 FunFam probable serine/threonine-protein kinase WNK9 107 286 - -
Gabi3837g00024 700 SUPERFAMILY Protein kinase-like (PK-like) 27 282 IPR011009 -
Gabi3837g00024 700 MobiDBLite consensus disorder prediction 530 553 - -
Gabi3837g00024 700 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 10 592 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3837g00024 Gabi-Chr3837 280446 283870 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3837g00024 1 604 MAP Kinase Kinase Kinase AT3G22420 50.847 0.0 608
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Gabi3837g00024 Pkinase 3.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3837g00024 K08867 - qsa:O6P43_003371 990.334