Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3836g00004 ATGGCCATTCTTCATGTCATACTTGTTATTTCCAAGTTACTATTGTTCTTCTCTCAAATTTCATCTTCAACTGATACCATTACCCTGTTTCAGTCCCTCCCTGATGATGACCGCACCTTGGTTTCTAAGGATGGAACCTTTGAGTTGGGGTTCTTCAATCCTGGTAGTTCCTCAAACCGCTATGTTGGAATATGGTACAAAAACATCCCAGTTAGAACTGTTGTTTGGGTTGGTAACCGTGACAACCCTATCAAAGACAACTCCAGCAAATTAATCATAAGCAAAGAAGGAAACCTTGTGCTTCTAAGCCAGAATCAGACTCTTCTTTGGTCAACAAACTCCACAAGAAAGGCTTCAAATCCCATTGTGCAGCTCTTGGACACTGGAAATTTAGTTCTTAGAAACGACAAGGACAATATCAATGAAGAGAATTTCCTGTGGCAGAGCTTCGACCATCCTTGTAATACAATGTTGCCAGGAATGAAGCTCGGATGGAACCTAAAAACCGGTCTTAATCGACGCTTTACTGCTTGGAAGAATTGGGATGACCCTTCTACAGGAGACTTTACTTGGGGTATTGTCCTTACTAGCAACCCAGAAATGGTATCGTGGAAGGGCACGGTTGAGTCCTACAGGAGTGGCCCTTGGAATGGCTTTCGATTCAGTGGTTCACCCTCAATGAGAGATAATCCAGTTTATGACTATGAGTTTGTCAACAACTCAGATGAGGTCATTTTCACATACAACCTCAAAGACAAGTCTGTTATTTTAATAATGGTTATAAACCAAACCCTTCATCTTCGTCAACTCTTCACATGGATTCCAGCAAACAGAACTTGGACGATTTACCATTCTATTCCGAGAGACAAATGTGATTCTTATAATCTTTGTGGCCCAAATAGGAATTGTGTTGAAGGTCAATCACCGATTTGCCAGTGCTTAGATGGGTTCAAACCGAAATCATCACAAGATTGGACACAAGGTTGTGTTCGGAATGAACCATGGAGTTGCAGGGTCAAAGATAAAGATGGTTTTCGTAGATTTGCTGGGATGAAAATCCCAGATACTACACATTCTTGGGTTAATGGAACTATGTCACTAGATGAATGCAGGGTCAAATGCTGGGAAAACTGTTCCTGCACGGCTTATGCAAACACTGACATAGGAGGAGCAGGTAGTGGCTGCGCCATGTGGTTCGGTGATCTTAATGATTTGAGAATTATAGAAGGTGGACAAGATCTGTTTATTCGAATGGTTACTTCAGATATAGCTGTAAATGAAGGTGCAACAGATGCAAAAAAGGTTGCCTTGGCAATTACCATGCCACTTCTATTTGTCCTTGGGTTGCTTCTCGCTTTCTGCTACATTTACAAGACCAGAAGAAAGTACAGAGAGAAAACAGAGACAAACATATCAACAGAAAAGACACCTGAAGAAGGAAGAGAAGATTTCGAGCTTCCATTCTTTGATCTTGCTACAGTGATTAATGCCACCAATGACTTCTCAATTGACAAGAAGCTTGGAGAAGGTGGTTTTGGACCAGTATACAAGGGTATCCTAGTAGACAAGCGAGAGATTGCTGTAAAAAGACTTTCAAGAGTTTCTCGGCAGGGTCAACAAGAATTTAAGAATGAAGTTATATTGTGTGCAAAACTTCAACACCGAAATCTTGTTAAGGTTATTGGTTGTTGCATTGAAGGAGAAGAGAAAATGCTGCTTTATGAATACATGCCCAACAAAAGCTTAGATTCATTTATTTTCGATTCTGCTCAAAGTAAATGTTTAGATTGGAGTAAACGCTTTAACATTATAAGTGGAATTGCTCGGGGTCTTCTTTACCTCCATCATGACTCTAGACTAAGGATCATACACAGAGATCTTAAAGCAAGTAACATTTTATTAGATAATGAAATGAACCCAAAGATTTCAGATTTTGGCTTGGCCAGAATATGTGGAGAAGATCAAATTGAAGGGGATACAAGTAGAGTAGTTGGTACATACGGTTATATGGCACCTGAATATGCAATTGATGGGATATTTTCCATCAAATCTGATGTTTTTAGCTTCGGAATATTATTACTAGAGATTGCAAGCGGAATGAAAAACAAAGGGATTTACTATCCAAGCCACAGTAATAATCTTATCGGGCATGCATGGAAGTTGTGGAAGGAGGGCATCCCTATGAAATTGATTGATACTTGTTTGCAGGATTCATGCATTCTATCTGAAGCTTTACGCTGCATTCAAATTGGCCTTTTATGTGTCCAACAACTTCCTGATGATAGGCCAAACATGAAATCTGTGGTTGTAATGTTGAGCACTGAGAGTTCTTTACCTGAACCGAAAGAGCCTGGTTTTTTAATAGAAAAGGACACAATTGAAAGGGAATATTTATCAATGAGGCTAACATCTTCAACAAATGAAGTAACTATCTCAATGTTAGAAGCCAGATAA 2454 0.3961 MAILHVILVISKLLLFFSQISSSTDTITLFQSLPDDDRTLVSKDGTFELGFFNPGSSSNRYVGIWYKNIPVRTVVWVGNRDNPIKDNSSKLIISKEGNLVLLSQNQTLLWSTNSTRKASNPIVQLLDTGNLVLRNDKDNINEENFLWQSFDHPCNTMLPGMKLGWNLKTGLNRRFTAWKNWDDPSTGDFTWGIVLTSNPEMVSWKGTVESYRSGPWNGFRFSGSPSMRDNPVYDYEFVNNSDEVIFTYNLKDKSVILIMVINQTLHLRQLFTWIPANRTWTIYHSIPRDKCDSYNLCGPNRNCVEGQSPICQCLDGFKPKSSQDWTQGCVRNEPWSCRVKDKDGFRRFAGMKIPDTTHSWVNGTMSLDECRVKCWENCSCTAYANTDIGGAGSGCAMWFGDLNDLRIIEGGQDLFIRMVTSDIAVNEGATDAKKVALAITMPLLFVLGLLLAFCYIYKTRRKYREKTETNISTEKTPEEGREDFELPFFDLATVINATNDFSIDKKLGEGGFGPVYKGILVDKREIAVKRLSRVSRQGQQEFKNEVILCAKLQHRNLVKVIGCCIEGEEKMLLYEYMPNKSLDSFIFDSAQSKCLDWSKRFNIISGIARGLLYLHHDSRLRIIHRDLKASNILLDNEMNPKISDFGLARICGEDQIEGDTSRVVGTYGYMAPEYAIDGIFSIKSDVFSFGILLLEIASGMKNKGIYYPSHSNNLIGHAWKLWKEGIPMKLIDTCLQDSCILSEALRCIQIGLLCVQQLPDDRPNMKSVVVMLSTESSLPEPKEPGFLIEKDTIEREYLSMRLTSSTNEVTISMLEAR 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3836g00004 817 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 464 576 - -
Gabi3836g00004 817 ProSiteProfiles Protein kinase domain profile. 501 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3836g00004 817 Pfam D-mannose binding lectin 73 179 IPR001480 -
Gabi3836g00004 817 SMART serkin_6 501 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3836g00004 817 Gene3D - 18 150 IPR036426 -
Gabi3836g00004 817 ProSiteProfiles PAN/Apple domain profile. 337 419 IPR003609 -
Gabi3836g00004 817 ProSitePatterns Serine/Threonine protein kinases active-site signature. 622 634 IPR008271 GO:0004672|GO:0006468
Gabi3836g00004 817 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 9 763 - -
Gabi3836g00004 817 ProSiteProfiles EGF-like domain profile. 287 323 IPR000742 -
Gabi3836g00004 817 Gene3D Transferase(Phosphotransferase) domain 1 577 782 - -
Gabi3836g00004 817 CDD STKc_IRAK 507 772 - -
Gabi3836g00004 817 Pfam Protein tyrosine and serine/threonine kinase 502 771 IPR001245 GO:0004672|GO:0006468
Gabi3836g00004 817 Pfam PAN-like domain 337 405 IPR003609 -
Gabi3836g00004 817 SUPERFAMILY Protein kinase-like (PK-like) 484 772 IPR011009 -
Gabi3836g00004 817 Pfam Domain of unknown function (DUF3403) 773 817 IPR021820 GO:0004674
Gabi3836g00004 817 PIRSF SRK 1 817 IPR024171 GO:0004674
Gabi3836g00004 817 CDD PAN_AP_plant 336 417 - -
Gabi3836g00004 817 Pfam S-locus glycoprotein domain 211 321 IPR000858 GO:0048544
Gabi3836g00004 817 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 577 780 - -
Gabi3836g00004 817 Gene3D Phosphorylase Kinase; domain 1 459 576 - -
Gabi3836g00004 817 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 20 150 - -
Gabi3836g00004 817 ProSiteProfiles Bulb-type lectin domain profile. 24 146 IPR001480 -
Gabi3836g00004 817 CDD B_lectin 36 153 IPR001480 -
Gabi3836g00004 817 SMART blect_4 31 153 IPR001480 -
Gabi3836g00004 817 SMART ntp_6 340 418 IPR003609 -
Gabi3836g00004 817 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 184 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3836g00004 Gabi-Chr3836 48794 52959 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3836g00004 443 788 Receptor kinase-like Gene Family AT4G23150 52.161 7.09e-121 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi3836g00004 PK_Tyr_Ser-Thr 8.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3836g00004 - - gmx:100790436 1128.62