Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3836g00003 ATGGCCATTCTTCATGTCATACTTGTTATTTCCAAGTTACTATTGTTCTTCTCTCAAATTTCATCTTCAACTGATACCATTACCCTGTTTCAGTCCCTCCCTGATGATGACCGCACCTTGGTTTCTAAGGATGGAACCTTTGAGTTGGGGTTCTTCAATCCTGGTAGTTCCTCAAACCGCTATGTTGGAATATGGTACAAAAACATCCCAGTTAGAACTGTTGTTTGGGTTGGTAACCGTGACAACCCTATCAAAGACAACTCCAGCAAATTAATCATAAGCAAAGAAGGAAACCTTGTGCTTCTAAGCCAGAATCAGACTCTTCTTTGGTCAACAAACTCCACAAGAAAGGCTTCAAATCCCATTGTGCAGCTCTTGGACACTGGAAATTTAGTTCTTAGAAACGACAAGGACAATATCAATGAAGAGAATTTCCTGTGGCAGAGCTTCGACCATCCTTGTAATACAATGTTGCCAGGAATGAAGCTCGGATGGAACCTAAAAACCGGTCTTAATCGACGCTTTACTGCTTGGAAGAATTGGGATGACCCTTCTACAGGAGACTTTACTTGGGGTATTGTCCTTACTAGCAACCCAGAAATGGTATCGTGGAAGGGCACGGTTGAGTCCTACAGGAGTGGCCCTTGGAATGGCTTTCGATTCAGTGGTTCACCCTCAATGAGAGATAATCCAGTTTATGACTATGAGTTTGTCAACAACTCAGATGAGGTCATTTTCACATACAACCTCAAAGACAAGTCTGTTATTTTAATAATGGTTATAAACCAAACCCTTCATCTTCGTCAACTCTTCACATGGATTCCAGCAAACAGAACTTGGACGATTTACCATTCTATTCCGAGAGACAAATGTGATTCTTATAATCTTTGTGGCCCAAATAGGAATTGTGTTGAAGGTCAATCACCGATTTGCCAGTGCTTAGATGGGTTCAAACCGAAATCATCACAAGATTGGACACAAGGTTGTGTTCGGAATGAACCATGGAGTTGCAGGGTCAAAGATAAAGATGGTTTTCGTAGATTTGCTGGGATGAAAATCCCAGATACTACACATTCTTGGGTTAATGGAACTATGTCACTAGATGAATGCAGGGTCAAATGCTGGGAAAACTGTTCCTGCACGGCTTATGCAAACACTGACATAGGAGGAGCAGGTAGTGGCTGCGCCATGTGGTTCGGTGATCTTAATGATTTGAGAATTATAGAAGGTGGACAAGATCTGTTTATTCGAATGGTTACTTCAGATATAGCTGTAAATGAAGGTGCAACAGATGCAAAAAAGGTTGCCTTGGCAATTACCATGCCACTTCTATTTGTCCTTGGGTTGCTTCTCGCTTTCTGCTACATTTACAAGACCAGAAGAAAGTACAGAGAGACAAACATATCAACAGAAAAGACACCTGAAGAAGGAAGAGAAGATTTCGAGCTTCCATTCTTTGATCTTGCTACAGTGATTAATGCCACCAATGACTTCTCAATTGACAAGAAGCTTGGAGAAGGTGGTTTTGGACCAGTATACAAGGGTATCCTAGTAGACAAGCGAGAGATTGCTGTAAAAAGACTTTCAAGAGTTTCTCGGCAGGGTCAACAAGAATTTAAGAATGAAGTTATATTGTGTGCAAAACTTCAACACCGAAATCTTGTTAAGGTTATTGGTTGTTGCATTGAAGGAGAAGAGAAAATGCTGCTTTATGAATACATGCCCAACAAAAGCTTAGATTCATTTATTTTCGATTCTGCTCAAAGTAAATGTTTAGATTGGAGTAAACGCTTTAACATTATAAGTGGAATTGCTCGGGGTCTTCTTTACCTCCATCATGACTCTAGACTAAGGATCATACACAGAGATCTTAAAGCAAGTAACATTTTATTAGATAATGAAATGAACCCAAAGATTTCAGATTTTGGCTTGGCCAGAATATGTGGAGAAGATCAAATTGAAGGGGATACAAGTAGAGTAGTTGGTACATACGGTTATATGGCACCTGAATATGCAATTGATGGGATATTTTCCATCAAATCTGATGTTTTTAGCTTCGGAATATTATTACTAGAGATTGCAAGCGGAATGAAAAACAAAGGGATTTACTATCCAAGCCACAGTAATAATCTTATCGGGCATGCATGGAAGTTGTGGAAGGAGGGCATCCCTATGAAATTGATTGATACTTGTTTGCAGGATTCATGCATTCTATCTGAAGCTTTACGCTGCATTCAAATTGGCCTTTTATGTGTCCAACAACTTCCTGATGATAGGCCAAACATGAAATCTGTGGTTGTAATGTTGAGCACTGAGAGTTCTTTACCTGAACCGAAAGAGCCTGGTTTTTTAATAGAAAAGGACACAATTGAAAGGGAATATTTATCAATGAGGCTAACATCTTCAACAAATGAAGTAACTATCTCAATGTTAGAAGCCAGATAA 2445 0.3963 MAILHVILVISKLLLFFSQISSSTDTITLFQSLPDDDRTLVSKDGTFELGFFNPGSSSNRYVGIWYKNIPVRTVVWVGNRDNPIKDNSSKLIISKEGNLVLLSQNQTLLWSTNSTRKASNPIVQLLDTGNLVLRNDKDNINEENFLWQSFDHPCNTMLPGMKLGWNLKTGLNRRFTAWKNWDDPSTGDFTWGIVLTSNPEMVSWKGTVESYRSGPWNGFRFSGSPSMRDNPVYDYEFVNNSDEVIFTYNLKDKSVILIMVINQTLHLRQLFTWIPANRTWTIYHSIPRDKCDSYNLCGPNRNCVEGQSPICQCLDGFKPKSSQDWTQGCVRNEPWSCRVKDKDGFRRFAGMKIPDTTHSWVNGTMSLDECRVKCWENCSCTAYANTDIGGAGSGCAMWFGDLNDLRIIEGGQDLFIRMVTSDIAVNEGATDAKKVALAITMPLLFVLGLLLAFCYIYKTRRKYRETNISTEKTPEEGREDFELPFFDLATVINATNDFSIDKKLGEGGFGPVYKGILVDKREIAVKRLSRVSRQGQQEFKNEVILCAKLQHRNLVKVIGCCIEGEEKMLLYEYMPNKSLDSFIFDSAQSKCLDWSKRFNIISGIARGLLYLHHDSRLRIIHRDLKASNILLDNEMNPKISDFGLARICGEDQIEGDTSRVVGTYGYMAPEYAIDGIFSIKSDVFSFGILLLEIASGMKNKGIYYPSHSNNLIGHAWKLWKEGIPMKLIDTCLQDSCILSEALRCIQIGLLCVQQLPDDRPNMKSVVVMLSTESSLPEPKEPGFLIEKDTIEREYLSMRLTSSTNEVTISMLEAR 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3836g00003 814 Pfam D-mannose binding lectin 73 179 IPR001480 -
Gabi3836g00003 814 Pfam S-locus glycoprotein domain 211 321 IPR000858 GO:0048544
Gabi3836g00003 814 ProSitePatterns Serine/Threonine protein kinases active-site signature. 619 631 IPR008271 GO:0004672|GO:0006468
Gabi3836g00003 814 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 461 573 - -
Gabi3836g00003 814 Gene3D - 18 150 IPR036426 -
Gabi3836g00003 814 ProSiteProfiles PAN/Apple domain profile. 337 419 IPR003609 -
Gabi3836g00003 814 ProSiteProfiles EGF-like domain profile. 287 323 IPR000742 -
Gabi3836g00003 814 Gene3D Phosphorylase Kinase; domain 1 458 573 - -
Gabi3836g00003 814 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 574 777 - -
Gabi3836g00003 814 Pfam Domain of unknown function (DUF3403) 770 814 IPR021820 GO:0004674
Gabi3836g00003 814 SUPERFAMILY Protein kinase-like (PK-like) 481 769 IPR011009 -
Gabi3836g00003 814 Pfam PAN-like domain 337 405 IPR003609 -
Gabi3836g00003 814 ProSiteProfiles Protein kinase domain profile. 498 775 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3836g00003 814 PIRSF SRK 1 814 IPR024171 GO:0004674
Gabi3836g00003 814 CDD PAN_AP_plant 336 417 - -
Gabi3836g00003 814 Pfam Protein tyrosine and serine/threonine kinase 499 768 IPR001245 GO:0004672|GO:0006468
Gabi3836g00003 814 ProSiteProfiles Bulb-type lectin domain profile. 24 146 IPR001480 -
Gabi3836g00003 814 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 9 760 - -
Gabi3836g00003 814 CDD B_lectin 36 153 IPR001480 -
Gabi3836g00003 814 SMART blect_4 31 153 IPR001480 -
Gabi3836g00003 814 Gene3D Transferase(Phosphotransferase) domain 1 574 779 - -
Gabi3836g00003 814 CDD STKc_IRAK 504 769 - -
Gabi3836g00003 814 SMART ntp_6 340 418 IPR003609 -
Gabi3836g00003 814 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 184 IPR036426 -
Gabi3836g00003 814 SMART serkin_6 498 771 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3836g00003 814 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 20 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3836g00003 Gabi-Chr3836 48794 52959 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3836g00003 435 786 Receptor kinase-like Gene Family AT4G23230 52.691 5.46e-122 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi3836g00003 PK_Tyr_Ser-Thr 8.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3836g00003 - - gmx:100790436 1134.01