Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3835g00058 ATGGCTTATCATTGGGGTGGGAGCAGTGCTTGCATTAACTCGGATAGAAAAGTGATGCAGAAGAAGCTATTACATGAGATTGGAGGTAATGCAATGCTTTCGATGGTGTACGGAAAAGTCCGAAAAAGTAAGAAAAAGGATAAGACAAGCAATGAGGTCGAAATATTCACTTTTGAAAGCATAACTGCTGCCGCAAACAATTTCTCAGCTGCTAATAAGCTAGGAGAGGGTGGTTTTGGTCCTGTTTATAAGGGAACATTACGTGATCGGCAAGAGGTCGCAATAAAGCGACTTTCTAAAAGTTCAGGACAAGGGCTGACAGAGTTTAAGAATGAAGCTAAACTCATGGCCAAACTCCAGCACAATAATCTCGTAAAGCTTTTAGGGTTCTGCATCCAGAGAGATGAAAGAATATTAGTATATGAGTACCTGTCTAACAAGAGCTTAGACTTCTACCTCTTTGATTCAACTAGAAAGAATTTGCTAGACTGGGAAAAACGCTTGAACATCATTGGAGGCATAGCTCAAGGACTTCTTTATCTTCACAAGTATTCAAGACTAAAGGTGATACATCGGGACCTGAAAGCAGGCAATATATTACTTGATGAAGAGATGAATCCTAAAATATCTGACTTTGGCTTGGCTCGAATATTTGGTCCAAGAGTATCAGAAGAAAAAACAAATAGAGTTATTGGTACATATGGTTACATGGCTCCAGAGTATGCAATATGTGGTGTTGTGTCTATCAAGACAGATGTATTTAGCTTTGGTGTGCTGCTTTTAGAGATTCTTAGTGGCAAGAAGAATCGTTGTCGTTATCATTTGGATCGCCAACTCAACCTCATAGGATATGCATGGCAGCTCTGGAATGAAGGTAGAGCTCTCGAGCTAGTAGACCCAGCATTAAATGAATTAAGTACTCAGAATGAAGTTTTGAGATGTATTCATATCGGCCTATTGTGTGTACAATACCAAGCAACAGATAGACCTACCATGTTAGATATTGTCTCTTTTCTATCAAATGATACAATACAACTTCCCCAACCACAGCAGCCAGCATTCTTCAACAATGGGGTAGCGGATGAGTCAGTACTTCCGTACAGCAAGCAAGAACATTATTCCTTGAATGATGTAACAATTTCTAATATTTATGGAAGATAA 1161 0.3928 MAYHWGGSSACINSDRKVMQKKLLHEIGGNAMLSMVYGKVRKSKKKDKTSNEVEIFTFESITAAANNFSAANKLGEGGFGPVYKGTLRDRQEVAIKRLSKSSGQGLTEFKNEAKLMAKLQHNNLVKLLGFCIQRDERILVYEYLSNKSLDFYLFDSTRKNLLDWEKRLNIIGGIAQGLLYLHKYSRLKVIHRDLKAGNILLDEEMNPKISDFGLARIFGPRVSEEKTNRVIGTYGYMAPEYAICGVVSIKTDVFSFGVLLLEILSGKKNRCRYHLDRQLNLIGYAWQLWNEGRALELVDPALNELSTQNEVLRCIHIGLLCVQYQATDRPTMLDIVSFLSNDTIQLPQPQQPAFFNNGVADESVLPYSKQEHYSLNDVTISNIYGR 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3835g00058 386 Pfam Domain of unknown function (DUF3403) 341 386 IPR021820 GO:0004674
Gabi3835g00058 386 ProSiteProfiles Protein kinase domain profile. 68 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3835g00058 386 SMART serkin_6 68 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3835g00058 386 CDD STKc_IRAK 74 339 - -
Gabi3835g00058 386 Pfam Protein tyrosine and serine/threonine kinase 71 339 IPR001245 GO:0004672|GO:0006468
Gabi3835g00058 386 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 38 382 - -
Gabi3835g00058 386 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
Gabi3835g00058 386 Gene3D Phosphorylase Kinase; domain 1 41 143 - -
Gabi3835g00058 386 SUPERFAMILY Protein kinase-like (PK-like) 50 370 IPR011009 -
Gabi3835g00058 386 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 144 347 - -
Gabi3835g00058 386 Gene3D Transferase(Phosphotransferase) domain 1 144 351 - -
Gabi3835g00058 386 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 34 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3835g00058 Gabi-Chr3835 626502 628137 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3835g00058 31 386 Receptor kinase-like Gene Family AT3G45860 52.830 1.31e-131 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi3835g00058 PK_Tyr_Ser-Thr 6.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3835g00058 - - lang:109358482 603.594