Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3835g00056 ATGCAGAAGCTATTAGATGAGATTCGAGGTAATGCGATGACGGTGTACGGCAAAGCAAGAAAAAGTAAGGAAAAGGAAAACACAAGCTACGAGGTGGAAGTATTCACTTTCAAAAGCATAACTGCAGCCACAAACAATTTCTCAGCCGCTAATAAGCTAGGAGAGGGTGGTTTCGGTCCTGTTTATAAGGGAATACTAAGTGATAGGCAAGAGGTAGCAATAAAGCGACTTTCTAAAAGTTCGGGACAAGGGCTAATAGAGTTTAAGAATGAAGCCAAACTCATGGCCAAACTCCAGCACACTAATCTTGTAAAGCTTTTAGGCTTCTGCATCCAGAATGATGAAAGAATATTAGTCTATGAGTACATGCCAAACAAGAGCTTAGACTTCTACCTGTTTGATTCAACTAGAAAGAATTTGTTAGACTGGAAAAAACGCTTGAACATCATTGGAGGCATTGCTCAAGGACTTCTTTATCTTCACAAGTATTCAAGACTAAGGGTGATACATCGGGACCTGAAAGCGAGCAATATATTACTTGATGAAGAGATGAATCCTAAAATATCTGACTTTGGCATAGCTCGAATATTTGGAAAAAGTGTATCAGAAGAAAACACAAATAGAGTTGTTGGTACATACGGTTACATGGCTCCAGAGTATGCAATATATGGTGTAGTGTCTATTAAGACAGATGTGTTTAGCTTTGGTGTACTGCTATTAGAGATTCTTAGTGGCAAGAAGAATCGTTGTCACTATCATTCAGATTGCCAACTCAACTTCATAGGATATGCATGGCAGCTCTGGAATGAAGGTAGAGCTCTCGAGCTAGTAGACCCAGCATTAAATGAATTAAGTACACACAATGAAGTTTTGAGATGTATTCATATCGGCCTCTTGTGTGTACAAGTTCAAGCAACAGACAGACCTACCATGTCAGATATTGTTTCTTTTCTATCAAATGATACAATACAACTTCCCCAACCAAAGCAGTCAGCATTCTTCATCAATGTGGTTGTGGAAGAGTCAGAACTTCCTTACAGCAAGCAAGAACATCATTCCTTAAATGATGTAACAAATACTAGTATTTATGGAAGATAA 1098 0.3852 MQKLLDEIRGNAMTVYGKARKSKEKENTSYEVEVFTFKSITAATNNFSAANKLGEGGFGPVYKGILSDRQEVAIKRLSKSSGQGLIEFKNEAKLMAKLQHTNLVKLLGFCIQNDERILVYEYMPNKSLDFYLFDSTRKNLLDWKKRLNIIGGIAQGLLYLHKYSRLRVIHRDLKASNILLDEEMNPKISDFGIARIFGKSVSEENTNRVVGTYGYMAPEYAIYGVVSIKTDVFSFGVLLLEILSGKKNRCHYHSDCQLNFIGYAWQLWNEGRALELVDPALNELSTHNEVLRCIHIGLLCVQVQATDRPTMSDIVSFLSNDTIQLPQPKQSAFFINVVVEESELPYSKQEHHSLNDVTNTSIYGR 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3835g00056 365 Pfam Protein tyrosine and serine/threonine kinase 50 318 IPR001245 GO:0004672|GO:0006468
Gabi3835g00056 365 Gene3D Phosphorylase Kinase; domain 1 9 122 - -
Gabi3835g00056 365 ProSiteProfiles Protein kinase domain profile. 47 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3835g00056 365 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Gabi3835g00056 365 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 19 360 - -
Gabi3835g00056 365 SUPERFAMILY Protein kinase-like (PK-like) 28 341 IPR011009 -
Gabi3835g00056 365 Pfam Domain of unknown function (DUF3403) 320 365 IPR021820 GO:0004674
Gabi3835g00056 365 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 12 122 - -
Gabi3835g00056 365 CDD STKc_IRAK 53 318 - -
Gabi3835g00056 365 Gene3D Transferase(Phosphotransferase) domain 1 123 333 - -
Gabi3835g00056 365 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 123 326 - -
Gabi3835g00056 365 SMART serkin_6 47 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3835g00056 Gabi-Chr3835 605394 606980 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3835g00056 37 333 Receptor kinase-like Gene Family AT4G23230 60.943 1.06e-132 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi3835g00056 PK_Tyr_Ser-Thr 1.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3835g00056 - - lang:109358482 589.341