Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3835g00055 ATGCTCTACTCAGGCCGTGCCATGTGGAGAAAATACAAAGCAAAAGAGGCTAGAAAAGTGATGGAGAAGAACCTATTGCATGAGATTGGAGGTAATGCAATGCTTTCGATGGTGTACGGCAAAGCCAGAAAAAGTAAGAAAAAGGAAAAGTCAAGCAATGAGGTGGAAGTATTCACATTCGAAAGCATAATTGCTGCCACAAACAATTTCTCAGCTGCGAATAAGCTCGGAGAGGGTGGTTTTGGTCCTGTTTATAAGGGAACATTAAGTGATCGGCAAGAGGTCGCAATGAAGCGACTTTCTAAAAGTTCAGGACAAGGGCTGATAGAGTTTAAGAATGAAGCTAAACTCATGGCCAAACTCCAGCACACTAATCTCGTAAAGCTTTTAGGGTTCTGCATCCAGAGGGATGAAAGAATATTAGTCTATGAGTACATGTCTAACAAGAGCTTAGATTTCTACCTCTTTGATTCAACTAGAAAGAGTTTGCTAGACTGGGACAAACGCTTGAACATCATTGGAGGCATAGCTCAAGGACTTCTTTATCTTCACAAGTATTCAAGACTAACGGTGATACATCGGGACCTGAAAGCTGGCAATATATTACTTGACGAAGAGATGAATCCTAAAATATCTGACTTTGGCATGGCTCGAATATTTGGTCAAAGAATATCAGAAGAAAATACTACTAGAGTTGTTGGTACATATGGCTACATGGCTCCAGAGATAATAAGGGGTGTTGTGTCTATCAAGACAGATGTATTTAGCTTTGGTGTTCTGCTATTAGAGATTCTTAGTGGCAAGAAGAATCATAGTCGCCATCATTCGGATCGCCCACTCAACCTCATAGGATATGCATGGGAGCTTTGGAATGAAGGTAGAGCTCTCGAGCTAGTAGAGCCAGCATTAAATGAATTAAATACTCAAAATGAAGTTTTAAGATGCATTCATATCGGGCTCTTGTGTGTACAAGATCAAGCAACAGATAGACCTACAATGTTAGATATTGTTTCTTTTCTATCAAATGATACAATACAACTTTCCCAACCAAAGCAGCCAGCATTCTTCATCAATGTGGTTGTGGAAGTGTCAGAACTTCCTTACAGCAAGCAAGAACATCATTCCTTAAATGATGTAACAAATACTAGTTATACGGCAGCTCAAAATAAGGCGTTGAAAAAGACGCGATCAAAAGACAAGGCGACATTGTACATGCTATTCCGAGCTGCTGACGAGTCAAGCTTTGAGAAGATTGCGAGTGCTACAACTTCAAAAGAAGCGTGGGATATTTTGACAAATGTCTACAAAGGAGCTGACAGTGTTATGCAAGTCCGACTTCAAACCCTCCGCGGCGAGTTGGAAGGAATGAAGATAAAGGAGACGGAAGAAGAATCAAAGGATCTAGCAACGCTCACTATTGAAGAGCTCGCTGGTTCCCTTGAGGCACATGAACAACGTAAGAAGAAGAAGGAGGAGGAGACACTTGAGCAAGTGCTTCAAACCAAGGCGTCAATCAAAGACGAGAAGGCCCTCTATTATCAAAACTTCCGAGGTAAAGGTCGTGGCCGTGGGGGACGTGGAAATGGTCGTGGTGGTAGAGGTCGTGGTCAAGAAAGACAGAGTGAGGAGAAAGGACAATTTAGCCAACAGAACTGGCGTGGAAGAGGACGAGGTCGTGGAAAAGGAGGTCGGTCGTATTACTCCAACATTGAGTGCTACAAGTGTGGCAAGTATGGTCACTATGCAAAAGATTGTAACTCGGATAAATGTTAG 1773 0.4224 MLYSGRAMWRKYKAKEARKVMEKNLLHEIGGNAMLSMVYGKARKSKKKEKSSNEVEVFTFESIIAATNNFSAANKLGEGGFGPVYKGTLSDRQEVAMKRLSKSSGQGLIEFKNEAKLMAKLQHTNLVKLLGFCIQRDERILVYEYMSNKSLDFYLFDSTRKSLLDWDKRLNIIGGIAQGLLYLHKYSRLTVIHRDLKAGNILLDEEMNPKISDFGMARIFGQRISEENTTRVVGTYGYMAPEIIRGVVSIKTDVFSFGVLLLEILSGKKNHSRHHSDRPLNLIGYAWELWNEGRALELVEPALNELNTQNEVLRCIHIGLLCVQDQATDRPTMLDIVSFLSNDTIQLSQPKQPAFFINVVVEVSELPYSKQEHHSLNDVTNTSYTAAQNKALKKTRSKDKATLYMLFRAADESSFEKIASATTSKEAWDILTNVYKGADSVMQVRLQTLRGELEGMKIKETEEESKDLATLTIEELAGSLEAHEQRKKKKEEETLEQVLQTKASIKDEKALYYQNFRGKGRGRGGRGNGRGGRGRGQERQSEEKGQFSQQNWRGRGRGRGKGGRSYYSNIECYKCGKYGHYAKDCNSDKC 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3835g00055 590 SUPERFAMILY Retrovirus zinc finger-like domains 551 586 IPR036875 GO:0003676|GO:0008270
Gabi3835g00055 590 Gene3D Transferase(Phosphotransferase) domain 1 146 354 - -
Gabi3835g00055 590 ProSitePatterns Serine/Threonine protein kinases active-site signature. 191 203 IPR008271 GO:0004672|GO:0006468
Gabi3835g00055 590 Pfam Protein kinase domain 72 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3835g00055 590 Pfam Zinc knuckle 571 586 IPR001878 GO:0003676|GO:0008270
Gabi3835g00055 590 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 36 145 - -
Gabi3835g00055 590 SMART c2hcfinal6 571 587 IPR001878 GO:0003676|GO:0008270
Gabi3835g00055 590 Coils Coil 473 508 - -
Gabi3835g00055 590 ProSiteProfiles Protein kinase domain profile. 70 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3835g00055 590 Gene3D Phosphorylase Kinase; domain 1 33 145 - -
Gabi3835g00055 590 ProSiteProfiles Zinc finger CCHC-type profile. 572 585 IPR001878 GO:0003676|GO:0008270
Gabi3835g00055 590 MobiDBLite consensus disorder prediction 516 566 - -
Gabi3835g00055 590 SUPERFAMILY Protein kinase-like (PK-like) 52 365 IPR011009 -
Gabi3835g00055 590 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 146 348 - -
Gabi3835g00055 590 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 39 382 - -
Gabi3835g00055 590 SMART serkin_6 70 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3835g00055 590 CDD STKc_IRAK 76 340 - -
Gabi3835g00055 590 Gene3D - 560 589 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3835g00055 Gabi-Chr3835 588571 592141 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3835g00055 33 357 Receptor kinase-like Gene Family AT3G45860 56.548 3.50e-126 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi3835g00055 Pkinase 2.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3835g00055 - - lang:109358482 620.542