Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3835g00050 ATGGATTTTTATAGAGAGTTTGTAGCAGGAGGCTTTGGAGGCACTGCTGGTGTGATCTCTGGTTACCCATTGGACACACTCCGCATCCTTCAACAGAGCTCCAACAATGGTTCTGCCTTAACCATCGTTAGAAATGTTGTAGCCAAGGAAGGACCAGCTGCTCTCTACCGTGGCATGGGTGCACCTTTGGCCTCTGTTACTTTTCAGAGCGCTATGGTTTTCCAAATTCATTCAGTTCTCTCAAGGGCATTTAGCTCGTCCATTTCAGCGAATGACCCTCCTTCACTCAAGGGTGTTGCTTTAGGAGGAGTTTGTGCCGGTGTTCTCCAAAGCACATTGCTCTCCCCTATTGAGTTGGTTAAAATTCGCCTTCAGCTTCCCAACACAGCCCAATTGACACAACCACAGAAAGGCCCTGTAAGTGTCGCTAAGAACATATGGAAAATGGAGGGTCTTCGTGGCATTTATCGAGGACTTGGCATCACTATGCTCAGAGATGCACCTGCATATGGATTCTACTTCTGGACATATGACTATGCGAGGGAAAAACTTCACCCAGGTTGCAGAGAAAGTTGTCAAGAAAGCTTGAATACTGTGTTAATAGCAGGAGGATTGGCTGGGGTAGCGAGTTGGGTTTCTAGCTACCCTTTTGACGTTATAAAGACAAGATTGCAGGCTCAGACACCTTCTTCGTTGAAATACAAAGGCATTGTGGATTGCTTTAGAAAGAGCATTAAGGAAGAAGGGTACGTTGTGCTTTGGCGGGGTATAGGAACTGCTGTCATTAGAGCGTTTGTAGTGAACGGTGCTGTGTTTTCGGCTTATGAGATCACTCAGAGGTGTCTCTTTAAGAACCAAAGCATTCAGATGTAG 873 0.4605 MDFYREFVAGGFGGTAGVISGYPLDTLRILQQSSNNGSALTIVRNVVAKEGPAALYRGMGAPLASVTFQSAMVFQIHSVLSRAFSSSISANDPPSLKGVALGGVCAGVLQSTLLSPIELVKIRLQLPNTAQLTQPQKGPVSVAKNIWKMEGLRGIYRGLGITMLRDAPAYGFYFWTYDYAREKLHPGCRESCQESLNTVLIAGGLAGVASWVSSYPFDVIKTRLQAQTPSSLKYKGIVDCFRKSIKEEGYVVLWRGIGTAVIRAFVVNGAVFSAYEITQRCLFKNQSIQM 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3835g00050 290 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 4 282 - -
Gabi3835g00050 290 PRINTS Mitochondrial carrier protein signature 156 174 IPR002067 GO:0055085
Gabi3835g00050 290 PRINTS Mitochondrial carrier protein signature 203 225 IPR002067 GO:0055085
Gabi3835g00050 290 PRINTS Mitochondrial carrier protein signature 6 19 IPR002067 GO:0055085
Gabi3835g00050 290 PRINTS Mitochondrial carrier protein signature 19 33 IPR002067 GO:0055085
Gabi3835g00050 290 ProSiteProfiles Solute carrier (Solcar) repeat profile. 1 83 IPR018108 -
Gabi3835g00050 290 ProSiteProfiles Solute carrier (Solcar) repeat profile. 194 281 IPR018108 -
Gabi3835g00050 290 Gene3D Mitochondrial carrier domain 3 289 IPR023395 -
Gabi3835g00050 290 SUPERFAMILY Mitochondrial carrier 2 276 IPR023395 -
Gabi3835g00050 290 ProSiteProfiles Solute carrier (Solcar) repeat profile. 94 183 IPR018108 -
Gabi3835g00050 290 Pfam Mitochondrial carrier protein 199 285 IPR018108 -
Gabi3835g00050 290 Pfam Mitochondrial carrier protein 3 85 IPR018108 -
Gabi3835g00050 290 Pfam Mitochondrial carrier protein 101 184 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3835g00050 Gabi-Chr3835 525482 528992 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3835g00050 1 287 Antiporters AT1G79900 62.290 1.39e-128 366
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3835g00050 K15109 - gmx:100812034 456.062