Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3835g00037 ATGCCCAAGAAGATTCAAAAGACCCTTCAAGATTACCTCTTCAAGATCAAAAACCCTCACCCTCAAATCCAATCACCCCTTAACATTCTCTCTAGCCGCAAGCATCCAAAGACACCTTCTTTTGCCTTATGCAACAACAATCACAACGATGATGCAGCCACTCTAGCCGATGTTGATCGTTTCCTCTTTGAGAATTTCAAGTCTCTATACTCCAAAGAAGATGAAGAAGAAAATGAAAACAAAAACAACACCAAAAGGGTTTCCGAAGAAAGCAACGAGGAATCTCCAAAACTAGCCTCCATCTTGTTCGAATCACCGAGGTTGTTGGAAACACCACGTGATCTTTGTGGCTCCGCACGATTCTTCGTGAGTCCAGGGTTCTCAGGGTCACTGATGGAGGATGCTCTCACGAGCATGACAACAACCACAACATGTGACGAAGCAGGATCAACCTCAATTACCACAACAACCCTCAATGGTTCACCTTCCAATTCTCAAGATCTAAAGGAAGCCATGGATCATACTCTTCCTGAGAACTGCATCGCACTCTTGACATACTCGCCGAACCCTTACGAGGATTTTCGGCGTTCCATGCAAGAAATGGTGGAAGCGAGGTTCTGGAACCGTGAAAGGGTCATCGATTGGGATTTCATGGAGGAGATATTGTTTTGTTACCTAAACCTGAATGAGAAGAAATCGCACAAGTTCATTCTCGCTGCTTTTGTGGATCTCACCACCGTCATGCGTCGGAATTTGGAGACAGCTCCGGCGAAGCCACGGAGTGTTCGAACTGTTAGGATTGGAAGGGAGTTAAGGAAGAAGACCAGAGAAACAACATACCTTTTAAATGTTACTACATACAATGCTGTTTCTGGTGGTTGGTCTAAGTTTGGAAGAGTGAATGAGATTGAGAGGATTATGGAGGAAATGGAAGCTGATGCCTTTCGTCCTGATTGCACGATTTTTAGTTTCTTTCTTGAGGGTTTGGGCAGAGCAGGTAGATTGGAAGAGGGTGTTGAGGTTTTCTGTAATATGAAGAAGAAAACTTGCCAGCCAGATACTGCTGCCTATAATGTAATGATTTTCAATTTCATATCAGTTGGAGATTTTGATGAATGTATGAAGTATTATAATGGGATGTTGAGTGATAATTGTAAACCTAATCTTGATACACCTACTGCTTTTCCCAGAGCCCGAAAAGTGGCAGATGCGCTTCTGGTGTTTGATGAGATGTTAAGGTAA 1242 0.4324 MPKKIQKTLQDYLFKIKNPHPQIQSPLNILSSRKHPKTPSFALCNNNHNDDAATLADVDRFLFENFKSLYSKEDEEENENKNNTKRVSEESNEESPKLASILFESPRLLETPRDLCGSARFFVSPGFSGSLMEDALTSMTTTTTCDEAGSTSITTTTLNGSPSNSQDLKEAMDHTLPENCIALLTYSPNPYEDFRRSMQEMVEARFWNRERVIDWDFMEEILFCYLNLNEKKSHKFILAAFVDLTTVMRRNLETAPAKPRSVRTVRIGRELRKKTRETTYLLNVTTYNAVSGGWSKFGRVNEIERIMEEMEADAFRPDCTIFSFFLEGLGRAGRLEEGVEVFCNMKKKTCQPDTAAYNVMIFNFISVGDFDECMKYYNGMLSDNCKPNLDTPTAFPRARKVADALLVFDEMLR 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3835g00037 413 Coils Coil 73 93 - -
Gabi3835g00037 413 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 318 352 IPR002885 -
Gabi3835g00037 413 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 283 317 IPR002885 -
Gabi3835g00037 413 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 353 387 IPR002885 -
Gabi3835g00037 413 NCBIfam pentatricopeptide repeat 323 354 IPR002885 -
Gabi3835g00037 413 NCBIfam pentatricopeptide repeat 356 388 IPR002885 -
Gabi3835g00037 413 MobiDBLite consensus disorder prediction 147 167 - -
Gabi3835g00037 413 Gene3D Tetratricopeptide repeat domain 264 413 IPR011990 GO:0005515
Gabi3835g00037 413 Pfam PPR repeat family 319 361 IPR002885 -
Gabi3835g00037 413 ProSiteProfiles OVATE domain profile. 183 247 IPR006458 -
Gabi3835g00037 413 Pfam Transcriptional repressor, ovate 187 246 IPR006458 -
Gabi3835g00037 413 NCBIfam uncharacterized plant-specific domain TIGR01568 181 246 IPR006458 -
Gabi3835g00037 413 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 276 412 - -
Gabi3835g00037 413 MobiDBLite consensus disorder prediction 72 93 - -
Gabi3835g00037 413 MobiDBLite consensus disorder prediction 72 98 - -
Gabi3835g00037 413 Pfam PPR repeat 286 311 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3835g00037 Gabi-Chr3835 397190 400306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3835g00037 272 413 Glycosyltransferase AT1G05670 22.603 1.31e-08 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Gabi3835g00037 Ovate 1.2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3835g00037 - - lja:Lj3g3v0160750.1 322.013