Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3835g00021 ATGGCACGTCCTGTAATTGCGAAGTTGACACTGGAAGGGGAATGCTACCACAAGACTTGCTTTAGGTGTGCTCATGCAGGTTGCCCTCTCACACATTCTTCCTATGCTGCACTGGATGGTGTTCTTTACTGCAGGCACCATTTTGCACAGCTTTTCATGGAGAAGGGAAACTACAATCATGTACTCCAGGCTGCAGCAAACAAGAAGAATGCTACTCCACCTCCTGAACCAGCTGATGATGAAGAACCATCAAAGCCAGAGCTTGAGCCTGAGCCACAGACAGAATCTGAGGAACAGAAGACAGAAGAAAATTCTAAAAATGAAACATAG 330 0.4606 MARPVIAKLTLEGECYHKTCFRCAHAGCPLTHSSYAALDGVLYCRHHFAQLFMEKGNYNHVLQAAANKKNATPPPEPADDEEPSKPELEPEPQTESEEQKTEENSKNET 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3835g00021 109 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 22 62 - -
Gabi3835g00021 109 Pfam LIM domain 10 51 IPR001781 -
Gabi3835g00021 109 SMART lim_4 2 47 IPR001781 -
Gabi3835g00021 109 MobiDBLite consensus disorder prediction 64 109 - -
Gabi3835g00021 109 PANTHER OS06G0237300 PROTEIN 8 105 - -
Gabi3835g00021 109 ProSiteProfiles LIM domain profile. 1 54 IPR001781 -
Gabi3835g00021 109 Gene3D Cysteine Rich Protein 2 60 - -
Gabi3835g00021 109 MobiDBLite consensus disorder prediction 74 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3835g00021 Gabi-Chr3835 201329 201792 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gabi3835g00021 LIM 3.7e-09 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3835g00021 - - zju:107423568 134.806