Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3835g00011 ATGGATGTTGCATCTCTGTGTCCAAATAGGAACACCCAAACCGACCAACATCCTTTGCTAATGGAGCAGCAAGAAACCCCTAATGGCCACATAATCAACATTACAAGGAGTGGTGAAGCTTTATCCACATTATCTCAGAATGATCATCACTCTGAAATGCATTTACCACAGAATGAAGATCTTCCAGATGGGGGCCCACAAGATTATACTCATCAGGGGTCTTCATTTTTTGCAACCAGTTTCAGCTCTAGAAATTCCTCTTTGTCGAGAAGAGGTGAGGGGTATGGTCATCATAGCAGAAGCATACCATTTAATTCTGGACTGTGGATTTCTGTTGAGCTTGTTGTCACTGTGAGTCAGATCATAGCAACTATAGTGGTTTTGTCATTGTCCAGGAATGACAATCCTCAAGCTCTGTTATTTGAATGGATTGTGGGTTATGCAGCTGGTTGTGTTGCCACACTTCCAACTATTTACTGGCGTTTTCGAAACCGTAATCAAAGCGCGGACGAAGATACCTCTCAACCATCTCAAGGATCTTCTGTAAGCAATCCTCCTGAAAGTATTTATACTGCCATCTATGTTTCTCGTGTTTCAGACGAGGAGAATGGTCATGCTACAGAATCAGCAGCAAGAAACACTAATATCCCTGGAGCCTTTACTTCTATGCTTAGTGGATTAGCATACTGTTTCAAGATGACCTTGGATTTCTTCTTTGCAGTTTGGTTTGTAATAGGAACTGTTTGGATCTTTGGAGTTCACTCTGCTCCTTCTGATGCTCCACAATTGTATAGGTTATGTATAGTGTTTCTTTCCATTAGCTGTATTAGATATGCTATGCCATTTATACTAAGTGCAAAAATTTGTTGGTGCCTACCTTGCATACTATCTGATTCGGGCTTTCCGGAGGATTTTTCTCTGAACGGAGGAGCAACAGTAGAATACATTAACACTCTACCAATCTACAAGTTCAAATTGAAAAACAATAAAAATGGTTATGATCAGGATGTCAACGCAGGTATAGATGAAGGTGGGATTTTGGCTGCAGGGACAGATAAGGAGAGGGTCATTTCAGGAGAAGATGCTGTTTGTTGCATTTGCTTGGCAAAATATGCAGATGATGATGAGCTTAGGGAGTTACCCTGCTTTCACGTCTTTCACGTTTGGTGTGTTGACAAATGGTTGAAGATAAAGGGATCCTGCCCTCTTTGTAAAAGTGAAGTTGGTATAATAAGTGGTGGATGGTCACCTTGA 1254 0.4115 MDVASLCPNRNTQTDQHPLLMEQQETPNGHIINITRSGEALSTLSQNDHHSEMHLPQNEDLPDGGPQDYTHQGSSFFATSFSSRNSSLSRRGEGYGHHSRSIPFNSGLWISVELVVTVSQIIATIVVLSLSRNDNPQALLFEWIVGYAAGCVATLPTIYWRFRNRNQSADEDTSQPSQGSSVSNPPESIYTAIYVSRVSDEENGHATESAARNTNIPGAFTSMLSGLAYCFKMTLDFFFAVWFVIGTVWIFGVHSAPSDAPQLYRLCIVFLSISCIRYAMPFILSAKICWCLPCILSDSGFPEDFSLNGGATVEYINTLPIYKFKLKNNKNGYDQDVNAGIDEGGILAAGTDKERVISGEDAVCCICLAKYADDDELRELPCFHVFHVWCVDKWLKIKGSCPLCKSEVGIISGGWSP 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3835g00011 417 SMART ring_2 364 404 IPR001841 -
Gabi3835g00011 417 Pfam Ring finger domain 364 405 IPR001841 -
Gabi3835g00011 417 ProSiteProfiles Zinc finger RING-type profile. 364 405 IPR001841 -
Gabi3835g00011 417 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 21 408 - -
Gabi3835g00011 417 SMART ringv_2 363 405 IPR011016 GO:0008270
Gabi3835g00011 417 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 314 409 IPR013083 -
Gabi3835g00011 417 MobiDBLite consensus disorder prediction 44 69 - -
Gabi3835g00011 417 SUPERFAMILY RING/U-box 356 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3835g00011 Gabi-Chr3835 122532 125681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3835g00011 1 409 C3H Transcription Factor Family AT1G80400 49.883 2.10e-135 392