Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3835g00010 ATGGACAAAGAAGGTCTTGGACTTGAAATCACTGAGCTAAGGTTGGGCCTTCCTGGTGCGGTGGACAAGAACGAGAAGAAAAGGGTGTTCTCGGAGATTGATGAGGCTGATGTTGATGATGAAAACATGATGAGTTGCTTCGGAAACCGGCAGAAAAAAATGCCGACGAAGAATCAAGTGGTGGGGTGGCCTCCGGTGTGCTCGTACCGGAAGAAGAACAGCATGAATGAAGCCTCAAAAATGTACGTTAAGGTTAGCATGGACGGTGCTCCGTTCTTGCGTAAAATTGATTTAGGTATGCATAAGGGATACTCAGAGTTAGCCTTGGCCTTGGAGATGCTCTTCACTTGTTATGGAATCGGCGAGGCGTTGAAGGATGCGGACAATTCTGAACACGTTCCCATCTACGAGGACAAAGATGGTGACTGGATGCTGGTTGGAGATGTTCCTTGGGAGATGTTTATCGAGTCATGCAAGAGGCTGAGGATTATGAAGAGATCAGATGCAAAGGGCTTCGATCTGCAACCAAAAGGGTCCTTAAAGGGATTTATAGAAGGCGTGACAAAGTGA 570 0.4702 MDKEGLGLEITELRLGLPGAVDKNEKKRVFSEIDEADVDDENMMSCFGNRQKKMPTKNQVVGWPPVCSYRKKNSMNEASKMYVKVSMDGAPFLRKIDLGMHKGYSELALALEMLFTCYGIGEALKDADNSEHVPIYEDKDGDWMLVGDVPWEMFIESCKRLRIMKRSDAKGFDLQPKGSLKGFIEGVTK 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3835g00010 189 Gene3D - 74 177 - -
Gabi3835g00010 189 SUPERFAMILY CAD & PB1 domains 73 165 - -
Gabi3835g00010 189 ProSiteProfiles PB1 domain profile. 80 168 IPR000270 GO:0005515
Gabi3835g00010 189 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 6 169 IPR003311 GO:0005634|GO:0006355
Gabi3835g00010 189 FunFam Auxin-responsive protein 75 176 - -
Gabi3835g00010 189 Pfam AUX/IAA family 26 172 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3835g00010 Gabi-Chr3835 114455 117906 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3835g00010 35 174 B3 DNA Binding Superfamily AT5G20730 26.708 9.26e-11 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gabi3835g00010 AUX_IAA 2.1e-46 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3835g00010 K14484 - gmx:547784 295.434