Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3835g00009 ATGTCACCAAAAAGTGGCATCCATTCATCGGAATCTGACGACGTTGACTGTAACTTGAAGGAGACTGAGCTCACCCTGAGTCTTCCGGGTACCAAAACTGGCACAAAACGTGGCTTCTCCGACACCGTTGATCTTCATCTCCGAAACTCAAAGAGTACTACTTGTGAAAATTCAGGAAATAACTTCTTGCGCTCCGCCACTAAATTCCCAACACCCAAGGCACATGTGGTGGGGTGGCCGCCGGTGAGGGAAAGCAGGAAGAATGCGATGAAGAGTTGCAAGTACGTGAAGGTGGCAGTCGATGGAGCTCCATATCTAAGAAAAGTGGATCTTGAAATATATGAGACTTATGAGCATCTACTGAGGGCCTTGGAGACCATGTTTTGTTGCTTAATCATTCGTAATCATTTGATGATTGAGAGGAAACTCATAGACCCAGGAAATGGGATTGAATATATGCCTACGTATGAGGACAAAGACGGTGACTGGATGTTGGTTGGGGATGTACCTTGGAAGATGTTTGTTGAATCATGCAAGAGAATAAGGCTTAAGGTTAGCTCAGAGGCCAGTGGCATAGGTCAGAGGACTACTTCAAAGTTAGCAGAATAA 609 0.4532 MSPKSGIHSSESDDVDCNLKETELTLSLPGTKTGTKRGFSDTVDLHLRNSKSTTCENSGNNFLRSATKFPTPKAHVVGWPPVRESRKNAMKSCKYVKVAVDGAPYLRKVDLEIYETYEHLLRALETMFCCLIIRNHLMIERKLIDPGNGIEYMPTYEDKDGDWMLVGDVPWKMFVESCKRIRLKVSSEASGIGQRTTSKLAE 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3835g00009 202 FunFam Auxin-responsive protein 88 196 - -
Gabi3835g00009 202 Pfam AUX/IAA family 26 195 IPR033389 -
Gabi3835g00009 202 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 17 190 IPR003311 GO:0005634|GO:0006355
Gabi3835g00009 202 SUPERFAMILY CAD & PB1 domains 84 184 - -
Gabi3835g00009 202 Gene3D - 87 199 - -
Gabi3835g00009 202 ProSiteProfiles PB1 domain profile. 93 186 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3835g00009 Gabi-Chr3835 95412 97416 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3835g00009 86 200 B3 DNA Binding Superfamily AT3G61830 30.435 5.50e-08 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gabi3835g00009 AUX_IAA 3e-53 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3835g00009 K14484 - gmx:100815098 276.559