LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi3835g00007	ATGAAGAAAGAAAATAGTGTCATCTTGAAATCTGGAGAGTTCACCGGTCGATTGACTCGTGCTCGAGCTGCTGCTTTTCGTGCATCTGGACAGTTGCCCCCTCTGAAGGGGGTAGCACAAGCCAGTCAGAAGCAGCCCTTAGGAGCCAATCCAAAAAGAGCAGTTTCAGATAATACATGTCTTCCGCATAAAAAGAGGGTTGCTCTTCAGGATGTCACTAACGTTTGCTGTGAAAATACATATAGGAGCTGTTTCAATGCAACTAAAATTCAGACTAAGAAAAGCAAGCTGGCTAAGACTGTTCAACTTAATGTTTCCAAAGTAGTTCCTTCAGTTGCTGTGGAGCTACCACAACTTCAAGTTGATTCAAAAGGAAAGAGTTTTCCAGAAACAGGGCTTAGATCAGAAGATGCTATGTGCTCAACTAATTTGGAAGACAATGCAGATGCACTTCTTTGGCTAAGAGCCAACCAGTGTGGCACACATGATAGTCTGCTTGACAGCCAGACATCTGGAATATCTTCTGAGCCTTTGATTTCTCAAGAGAGAGCTGTACAAATTGTTGCAGCTAAGAAAAGTAGCCTTTCTGAACTTTTGAATGCTTCAAAAGATCCTGATGTCACTGATATAGATGCTGATTTCGAAGATTCTCAATTGTGCAGCCTCTACGCCACTGATATCTATAACAACTTGCGTGCTACTGAGCTGTCAAGAAGGCCTTATCCTAACTTCATGGAAAGAGTACAGCAAGATATCACTCAAAGCATGCGTGGGATACTGGTTGATTGGCTTGTAGAGGTTTCTGAGGAATACAAATTGGTGTCAGACACACTTTACCTCACGGTATATCTCATAGATTGGTTTCTCTCCGAAAATTACATTGAAAGACAAAGACTTCAGCTGCTTGGCATCACCTGCATGCTAATTGCTTCGAAATATGAAGAAATTAATGCCCCAAGAATTGAAGAATTCTGCTTCATCACAGACAACACATACTCAAAAGAGGAAGTACTAAAAATGGAGACTCAAGTGTTAAAGTCCTCTACATATAAACTGTTTGTTCCCACTACAAAAACTTTCCTCAGGAGGTTTCTTCGAGCAGCACAAGCTTCTTACAAGAGCCCCAGCTTTGAATTGGAGTACTTGGCCAATTACCTAGCTGAACTAACACTGATGAACTATAGTTTCTTAAATTTCCTTCCTTCTATGATTGCTGCATCTGCTGTATTTCTTGCCAGATGGACATTAGATCAATCAAGCCATCCATGGAATCCAACTCTTCAACACTATGCCTCTTACAAAGCATCAGATTTGAAAACCACAGTTCTTGGATTACAGAATCTACGGCTGAATAGCAATGGCTGCCCTTTAACTGCCATCAACACAAAGTACAGGCAAGACAAGTTTAAATGTGTAGCAGCTTTGTCATCACCAAAACTGCTTGAAAGTCTGTTCTGA	1458	0.4115	MKKENSVILKSGEFTGRLTRARAAAFRASGQLPPLKGVAQASQKQPLGANPKRAVSDNTCLPHKKRVALQDVTNVCCENTYRSCFNATKIQTKKSKLAKTVQLNVSKVVPSVAVELPQLQVDSKGKSFPETGLRSEDAMCSTNLEDNADALLWLRANQCGTHDSLLDSQTSGISSEPLISQERAVQIVAAKKSSLSELLNASKDPDVTDIDADFEDSQLCSLYATDIYNNLRATELSRRPYPNFMERVQQDITQSMRGILVDWLVEVSEEYKLVSDTLYLTVYLIDWFLSENYIERQRLQLLGITCMLIASKYEEINAPRIEEFCFITDNTYSKEEVLKMETQVLKSSTYKLFVPTTKTFLRRFLRAAQASYKSPSFELEYLANYLAELTLMNYSFLNFLPSMIAASAVFLARWTLDQSSHPWNPTLQHYASYKASDLKTTVLGLQNLRLNSNGCPLTAINTKYRQDKFKCVAALSSPKLLESLF	485

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi3835g00007	485	FunFam	Cyclin A1	341	474	-	-
	Gabi3835g00007	485	FunFam	Mitotic cyclin 6	240	340	-	-
	Gabi3835g00007	485	Gene3D	-	226	474	-	-
	Gabi3835g00007	485	SUPERFAMILY	Cyclin-like	354	480	IPR036915	-
	Gabi3835g00007	485	PIRSF	Cyclin_A_B_D_E	29	484	IPR046965	GO:0016538\|GO:0044772
	Gabi3835g00007	485	CDD	CYCLIN_AtCycA_like_rpt1	216	347	-	-
	Gabi3835g00007	485	Pfam	Cyclin, N-terminal domain	226	347	IPR006671	-
	Gabi3835g00007	485	Pfam	Cyclin, C-terminal domain	355	477	IPR004367	-
	Gabi3835g00007	485	SMART	Cyclin_C_2	355	478	IPR004367	-
	Gabi3835g00007	485	SUPERFAMILY	Cyclin-like	215	347	IPR036915	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi3835g00007	Gabi-Chr3835	67287	74840	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi3835g00007	1	485	Core Cell Cycle Gene Families	AT1G80370	52.352	3.65e-167	478

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi3835g00007	K06627		-	gmx:100789757	663.685

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