Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3835g00004 ATGAGCGGAGCTTCATTGAGTGGCCTCCAAGACCACCTCAAATTGGCCAGAGAATACGCTGTCGAAGGACTCTACGACACCTCAATCATCTTCTTCGACGGCGCCGTTGCACAGATCAACAAGCACCTAAACAGTGTGGATGACCCTTTAATCCGTGCGAAGTGGATGAACGTGAAGAAAGCCCTAAGTGAGGAAACGGAAGTTGTGAAGCAATTAGATTCGGAGAGAAGGGCATTTAAGGAAATCCAAAGTGGACGACGCCCAGCTTCACCACCAATAGCATTGTCTGGTAAATCGTCCTTTGTTTTTCAACCGTTGGATGAGTATCCCACTTCTTCTTCATCTTCAGCCGTCGATGACCCCGATGTGTGGAGGCCACCTAGTCGAGATGCAGGTAGAAGATCCACCGCAACCACAAGGCCCAATTCTCGTAAAGATGGTGTTTGGGCTCGAGGTTCTAGCAGTACCAGAACCGCCACTACAACTGGTCGTGGCGCAAAGGCTAAGGTTAACACTGGAGCACGAGCATCAACCACGGGCAAGAAAGGCACTGCTTCTGGAAAGTCGTCTAGTAAGGCAGATTCACTTAGTGGTGATGGTGAGGATGGGAAGTCAAAGAGGGCACAATATGAAGGTCCTGATCCTGACTTGGCCGAAATGCTTGAAAGGGATGTGTTAGAAACCTCTCCTGGTGTTAGATGGGATGATGTTGCGGGCCTCACTGAAGCCAAAAGACTTCTAGAAGAAGCTGTTGTTCTTCCCTTATGGATGCCTGAATATTTCCAGGGAATTAGGAGACCGTGGAAGGGTGTTCTCATGTTTGGTCCTCCCGGAACTGGGAAGACGCTGCTTGCTAAAGCAGTTGCTACTGAATGTGGTACTACTTTCTTTAATGTTTCTTCTGCTACTTTGGCTTCTAAATGGCGTGGAGAGAGTGAACGCATGGTACGGTGTTTGTTTGATCTTGCAAGAGCATATGCACCGAGTACAATTTTCATTGATGAAATTGATTCTCTTTGCAATGCTAGGGGGGCTTCTGGGGAGCATGAATCGTCCAGAAGGGTGAAGTCTGAACTTCTAGTTCAGGTTGATGGTGTAAATAATAGTTCGACAAATGAAGATGGTAGCCGTAAAATAGTTATGGTTCTGGCAGCCACCAACTTCCCATGGGACATAGATGAGGCACTGAGGAGAAGGCTGGAAAAACGTATATATATTCCTCTACCAAAATTTGAGAGTCGTAAAGAGTTGATCCGTATCAACTTGAAGACTGTAGAGGTGGCCACGGATGTCAATATAGATGAAGTGGCTCGCCGGACAGACGGCTATAGTGGGGATGATTTGACAAATGTATGCCGTGATGCCTCTCTAAATGGTATGAGACGTAAGATAGCGGGAAAAACTCGTGATGAGATCAAGAACATGCCTAAGGATGAGATTTCAAATGATCCTGTTGCGATGTGCGATTTTGAAGAAGCTTTGAAGAAAGTCCAACGAAGTGTTTCTCAGGCTGACATTGAGCGCCATGAGAAGTGGTTCACTGAATTTGGATCAGCATGA 1560 0.4673 MSGASLSGLQDHLKLAREYAVEGLYDTSIIFFDGAVAQINKHLNSVDDPLIRAKWMNVKKALSEETEVVKQLDSERRAFKEIQSGRRPASPPIALSGKSSFVFQPLDEYPTSSSSSAVDDPDVWRPPSRDAGRRSTATTRPNSRKDGVWARGSSSTRTATTTGRGAKAKVNTGARASTTGKKGTASGKSSSKADSLSGDGEDGKSKRAQYEGPDPDLAEMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNSSTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPKFESRKELIRINLKTVEVATDVNIDEVARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMPKDEISNDPVAMCDFEEALKKVQRSVSQADIERHEKWFTEFGSA 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3835g00004 519 FunFam Katanin p60 ATPase-containing subunit A1 4 80 - -
Gabi3835g00004 519 ProSitePatterns AAA-protein family signature. 380 399 IPR003960 GO:0005524|GO:0016887
Gabi3835g00004 519 Gene3D - 409 495 - -
Gabi3835g00004 519 MobiDBLite consensus disorder prediction 132 194 - -
Gabi3835g00004 519 CDD Kp60-NTD 7 75 - -
Gabi3835g00004 519 Pfam AAA+ lid domain 430 471 IPR041569 -
Gabi3835g00004 519 FunFam Katanin p60 ATPase-containing subunit A1 409 495 - -
Gabi3835g00004 519 PANTHER AAA DOMAIN-CONTAINING 25 518 - -
Gabi3835g00004 519 Gene3D - 3 80 - -
Gabi3835g00004 519 MobiDBLite consensus disorder prediction 109 216 - -
Gabi3835g00004 519 SMART AAA_5 267 410 IPR003593 GO:0016887
Gabi3835g00004 519 FunFam Katanin p60 ATPase-containing subunit A1 229 397 - -
Gabi3835g00004 519 Gene3D - 229 510 IPR027417 -
Gabi3835g00004 519 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 231 515 IPR027417 -
Gabi3835g00004 519 Pfam ATPase family associated with various cellular activities (AAA) 271 408 IPR003959 GO:0005524|GO:0016887
Gabi3835g00004 519 Hamap Meiotic spindle formation protein mei-1 [mei-1]. 7 519 IPR028596 GO:0008017|GO:0008568|GO:0051013
Gabi3835g00004 519 MobiDBLite consensus disorder prediction 195 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3835g00004 Gabi-Chr3835 47002 50198 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3835g00004 223 511 Calmodulin-binding Proteins AT3G56690 40.000 1.56e-50 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3835g00004 K07767 - mnt:21402373 856.284