Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3826g00039 ATGAAACTCTCTTCAGCTGGTGCTGGTTTTTGCCCTCCACCCCAGGAAGGAGAAAAGCGAGTTCTAGATTCAGAACTTTGGCATGCATGTGCTGGTCCTCTTGTTTCTTTACCAGCTGTTGGAAGCCGAGTGGTCTACTTTCCCCAAGGTCACAGTGAACAGGTTGCTGTGTCTACAAACAGGGAAGTGGATGCCCATATCCCCAACTATCCAAGCTTACCTCCCCAACTTATTTGTCAACTTCATAACATGACGATGCATGCTGATACTGAGACAGATGAAGTATACGCACAGATGACCTTGCAACCTCTGAATCCTGAAGAGCAAAAGGAGGCGTACCTTCCATCAGAGTTGGGCACTCCGAGTAAACAGCCAACAAACTACTTTTGCAAAATTTTGACAGCCAGTGACACAAGCACTCATGGAGGGTTCTCTGTTCCTCGCCGGGCAGCTGAAAAAGTTTTTCCTCCATTGGACTTCTCACAACATCCTCCTGCTCAGGAGTTAATTGCAAGGGATTTGCATGGCAATGAATGGAAATTCAGACATATCTTTCGCGGCCAGCCCAAAAGGCATCTGCTTACAACAGGATGGAGTGTCTTTGTTAGTGCTAAAAGACTTGTTGCTGGTGATTCGGTGCTGTTTATCTGGAATGAAAAAAATCAATTGCTTCTTGGCATTCGGCGTGCTAATCGACCACAACCTGTGATGCCTTCTTCAGTGTTGTCAAGTGATAGCATGCACTTGGGGCTTCTTGCTGCTGCAGCTCATGCAGCTGCAACAAACAGTCGTTTCACCATTTTCTATAACCCCCGTGCTAGCCCGTCAGAATTTGTCATACCCTTAGCGAAGTATGTTAAAGCTGTGTATCATACTCGAGTTTCAGTTGGTATGCGCTTCAGGATGTTGTTTGAAACTGAGGAGTCTAGTGTGAGGCGATACATGGGCACAATAACTGGCATTAGCGACTTGGATCCTATCAAGTGGCCAAATTCACATTGGCGCTCAGTCAAGGTTGGCTGGGATGAATCCACAGCAGGAGAGAGGCAACCTCGAGTGTCTCTATGGGAAATTGAGCCATTAACAACATTTCCGATGTATCCATCTCCATTCCCCCTTAGGCTTAAAAGACCATGGCCTACAGGACTTCCTCCGTTCCATGCAGGTTTGAAGGATGATGATTTTGGCATAAATTCTTCACTATTGTGGCTTCGGGACACAGATAGAGGTCTTCAGTCTCTTAATCCTCAGGGGATTGGCGTTAGTCCTTGGATGCAACAAAGACTTGATCCCTCCATGGTGAATTTGCAAACAGATATGTACCAGGCTATGGCTGCTGCTGCACTTCAGGATATGAGGCCTTTGGATCCTTCCAAACAGCATCATGCATCTTTACTTCAATTTCAGCAACCACACAACTTCCCCAACAGGACTGCTGCTTTAATGCAGACACAGATGTTGCAGCAGTCTCAACCTCAGCAGGCTTTTCCAAATAATCAAGAAAATCATCATCCATCTCAATCTCAATCTCAAGCTCAAATGCATCTTCAACAGCATCTACAGCATCAGCACTCGTTCAGTAATAATAGTAATCATCTTCATCTGCAGCAGCAACAACCACAACACCAACAGCAAGTGGTAGATCATCAGCAAATTTCAGGTGCTGTGTCTACAATGTCTCAGTTTGTTTCGGCACCTCAACCTCAATCACCACCTATGCAAGCTATATCTTCACTCAGCCATCAACAAAGTTTCTCTGATTCAACTGGGAACCCTGTGACTACTACTATTGTTTCTCCCCTGCATAGTATATTGGGTTCATTTCCCCAGGATGAAACATCTAACCTTCTCAACATTCCGAGAACAAGCTCTTGGGTTCCTGTTCAACCTTCAACTGCATGGCCCTCCAAGCGTGTTGCATTGGATCCTCTCCTTTCTTCTGGAGCATCTCAATGTGTTCTGCCTCAGGTGGACCAGTTGGGGCAGCCACAGAGTACCATGTCTCAAAATGCTATTACATTGCCACCCTTTCCTGGTAGGGAGTGCACTATAGAAGGCAGCACTGATCCACAAAACCATCTTTTGTTTGGTGTTAATATAGAGCCCTCGTCGCTTCTAGTGCATAATGGGATGTCAAGCCTTAAGGGGATCAACAGCAACAGTGACTCATCAACAATACATTTTCAATCTTCTAATTACCTGAATACCACAGGCACTGATTCTTCATTGAATCTTGGAATGACACACGACATTGGTGAGTCGGGCTTCCTGCAAACTTCAGAAAATGGGGGCCAAGGAAACTCACCAACTAAAACCTTTGTGAAGGTTCACAAGTCAGGGTCCTTCGGAAGATCATTGGATATCACTAAATTCACCAGCTACCCTGAGCTGCGCAGTGCGCTTGCTCATATGTTTGGCCTTGAAGGTGAGCTGGAGGACCCAAGATCAGGCTGGCAGCTTGTATTCGTTGACCAAGAGAATGATGTTCTTCTCCTTGGTGATGGCCCTTGGCCGGAATTTGTAAATAGTGTATGGTGCATCAAGATACTTTCCCCTCAGGAAGTGCAGCAAATGGGCAATGGCCTAGAGCTTCTGAACTCCGTTCCAATTCAGAGGCTCTCTAATGGCATTGGTGATGACTACGCTGGCCGTGAGGACCCAAGAAATTTAAGCACCGGGATAACAACTGTGGTATCTTTAGACTACTGA 2709 0.4596 MKLSSAGAGFCPPPQEGEKRVLDSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAVSTNREVDAHIPNYPSLPPQLICQLHNMTMHADTETDEVYAQMTLQPLNPEEQKEAYLPSELGTPSKQPTNYFCKILTASDTSTHGGFSVPRRAAEKVFPPLDFSQHPPAQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQPVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPIKWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPTGLPPFHAGLKDDDFGINSSLLWLRDTDRGLQSLNPQGIGVSPWMQQRLDPSMVNLQTDMYQAMAAAALQDMRPLDPSKQHHASLLQFQQPHNFPNRTAALMQTQMLQQSQPQQAFPNNQENHHPSQSQSQAQMHLQQHLQHQHSFSNNSNHLHLQQQQPQHQQQVVDHQQISGAVSTMSQFVSAPQPQSPPMQAISSLSHQQSFSDSTGNPVTTTIVSPLHSILGSFPQDETSNLLNIPRTSSWVPVQPSTAWPSKRVALDPLLSSGASQCVLPQVDQLGQPQSTMSQNAITLPPFPGRECTIEGSTDPQNHLLFGVNIEPSSLLVHNGMSSLKGINSNSDSSTIHFQSSNYLNTTGTDSSLNLGMTHDIGESGFLQTSENGGQGNSPTKTFVKVHKSGSFGRSLDITKFTSYPELRSALAHMFGLEGELEDPRSGWQLVFVDQENDVLLLGDGPWPEFVNSVWCIKILSPQEVQQMGNGLELLNSVPIQRLSNGIGDDYAGREDPRNLSTGITTVVSLDY 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3826g00039 902 Gene3D - 127 230 IPR015300 -
Gabi3826g00039 902 Pfam Auxin response factor 255 338 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gabi3826g00039 902 Gene3D - 293 365 - -
Gabi3826g00039 902 ProSiteProfiles B3 DNA-binding domain profile. 129 231 IPR003340 GO:0003677
Gabi3826g00039 902 FunFam Auxin response factor 766 859 - -
Gabi3826g00039 902 Pfam B3 DNA binding domain 129 230 IPR003340 GO:0003677
Gabi3826g00039 902 ProSiteProfiles PB1 domain profile. 771 854 IPR000270 GO:0005515
Gabi3826g00039 902 MobiDBLite consensus disorder prediction 486 524 - -
Gabi3826g00039 902 CDD B3_DNA 128 229 IPR003340 GO:0003677
Gabi3826g00039 902 Pfam AUX/IAA family 765 855 IPR033389 -
Gabi3826g00039 902 FunFam Auxin response factor 293 365 - -
Gabi3826g00039 902 SUPERFAMILY DNA-binding pseudobarrel domain 114 258 IPR015300 -
Gabi3826g00039 902 FunFam Auxin response factor 127 231 - -
Gabi3826g00039 902 SMART B3_2 129 231 IPR003340 GO:0003677
Gabi3826g00039 902 Gene3D - 767 859 - -
Gabi3826g00039 902 SUPERFAMILY CAD & PB1 domains 767 845 - -
Gabi3826g00039 902 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 859 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3826g00039 Gabi-Chr3826 611757 619194 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3826g00039 1 486 B3 DNA Binding Superfamily AT1G30330 84.114 0.0 818
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gabi3826g00039 AUX_IAA 3.7e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3826g00039 - - gmx:100777789 1514.59