Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3826g00024 ATGAAGATGACGTCACGGTCAGGGCATTCTATCAGCGGTGGCAGGACCCGAGTGGGAAAATATGAACTGGGTCGGACCTTGGGTGAGGGAAACTTCGCTAAGGTGAAGTTTGCACGGAACACTGAGACCGGAGAGAACGTCGCCATCAAAATTCTAGACAAAGAAAAAGTTCTCAAGCACAAAATGATAGGCCAGATAAAACGTGAAATATCAACAATGAAACTGATTAGACACCCGAATGTCATACGTATGCATGAGGTGATGGCTAGCAAGACAAAGATATACATTGTATTGGAACTTGTGACTGGTGGGGAACTGTTTGATAAAATTGCAAGCCGCGGAAGACTGAAAGAAGATGAAGCAAAAAAATATTTTCAGCAGCTTATATGTGCTGTGGATTACTGTCACAGTAGAGGCGTTTGCCATAGAGACCTAAAGCCGGAGAATTTGTTGCTGGATGCTGATGGAGTGCTTAAAGTATCAGATTTTGGATTGAGTGCACTACCTCAACAAGTTCGAGAAGATGGACTGCTTCACACAACATGTGGTACACCAAATTATGTTGCCCCAGAGGTGATCCATAACAAAGGCTATGATGGTGCAAAGGCTGATCTCTGGTCATGTGGTGTTATTCTTTTTGTTTTAATGGCTGGCTATTTGCCCTTCGAAGAGAGCAACCTTATGGCTTTGTATAAAAAGATTTTCAAGGCTGAGTTCACTTGTCCTCAATGGTTTTCTACAAGTGCGAAGAAACTAATGAAGAGAATCCTTGATCCCAATCCTGCTACACGGATTACAATTGCTGAGGTCATTGAGAATGCATGGTTCAAGAAGGGGTATGAGCCTCCTAGATTTTCGCAGGCAAATGTTAGTCTCGATGATGTGAATGCTATTTTCAATGAAGCTACCGATTCACAAAATCTTATTGTGGAGAGGCGAGAAGAGGGGCCAGTGGCACCTATGACTATGAATGCGTTTGAGCTTATCTGTACATCTCAGGGCCTCAACCTTGGAAATCTTTTTGAGAAGAAGATGGGACTTGTTAAAAGGGAAACAAGATTCACATCCAAATGTTCAGCGAATGAGATAATTTCAAAAATTGAGCAGGCTGCAGTGCCTTTGGGTTTTGATGTTAAGAAGAACAACTGCAAGTTGAAGATTCAAGGGGAAAAGACTGGGCGTAAAGGTCATCTATTAGTAGCCACTGAGATCTTTGAGGTGGCCCCTTTCCTTAACATGGTTGAACTCCGAAAATCTGGAGGAGATACTCTGGAATTTCACAAGTTCTACAAGAATCTATCTACTGGGCTGAAAGATATCATTTGGAAAGCAGAGCCTATCGACGAAGAAACAGATGGTGCAAGTACATCAACATAA 1377 0.4241 MKMTSRSGHSISGGRTRVGKYELGRTLGEGNFAKVKFARNTETGENVAIKILDKEKVLKHKMIGQIKREISTMKLIRHPNVIRMHEVMASKTKIYIVLELVTGGELFDKIASRGRLKEDEAKKYFQQLICAVDYCHSRGVCHRDLKPENLLLDADGVLKVSDFGLSALPQQVREDGLLHTTCGTPNYVAPEVIHNKGYDGAKADLWSCGVILFVLMAGYLPFEESNLMALYKKIFKAEFTCPQWFSTSAKKLMKRILDPNPATRITIAEVIENAWFKKGYEPPRFSQANVSLDDVNAIFNEATDSQNLIVERREEGPVAPMTMNAFELICTSQGLNLGNLFEKKMGLVKRETRFTSKCSANEIISKIEQAAVPLGFDVKKNNCKLKIQGEKTGRKGHLLVATEIFEVAPFLNMVELRKSGGDTLEFHKFYKNLSTGLKDIIWKAEPIDEETDGASTST 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3826g00024 458 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Gabi3826g00024 458 FunFam Non-specific serine/threonine protein kinase 317 443 - -
Gabi3826g00024 458 FunFam Non-specific serine/threonine protein kinase 12 100 - -
Gabi3826g00024 458 SMART serkin_6 21 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3826g00024 458 ProSitePatterns Protein kinases ATP-binding region signature. 27 50 IPR017441 GO:0005524
Gabi3826g00024 458 Gene3D Kinase associated domain 1, KA1 318 443 - -
Gabi3826g00024 458 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 18 432 - -
Gabi3826g00024 458 ProSiteProfiles NAF domain profile. 318 342 IPR018451 GO:0007165
Gabi3826g00024 458 SUPERFAMILY Protein kinase-like (PK-like) 18 295 IPR011009 -
Gabi3826g00024 458 Pfam Protein kinase domain 21 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3826g00024 458 Pfam NAF domain 320 380 IPR004041 GO:0007165
Gabi3826g00024 458 Gene3D Transferase(Phosphotransferase) domain 1 101 282 - -
Gabi3826g00024 458 CDD CIPK_C 324 439 - -
Gabi3826g00024 458 FunFam Non-specific serine/threonine protein kinase 14 316 - -
Gabi3826g00024 458 Gene3D Phosphorylase Kinase; domain 1 10 100 - -
Gabi3826g00024 458 ProSiteProfiles Protein kinase domain profile. 21 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3826g00024 458 CDD STKc_SnRK3 20 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3826g00024 Gabi-Chr3826 483340 491286 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3826g00024 3 450 CBL-interacting serine-threonine protein kinases AT1G01140 67.401 0.0 647
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Gabi3826g00024 Pkinase 2.8e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3826g00024 - - gmx:100788746 794.653